Strain Fitness in Agrobacterium fabrum C58 around Atu3803

Experiment: R2A with Vancomycin 0.009 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3801 and Atu3802 overlap by 8 nucleotidesAtu3802 and Atu3803 overlap by 8 nucleotidesAtu3803 and Atu3804 are separated by 266 nucleotides Atu3801: Atu3801 - proline/glycine betaine ABC transporter permease, at 896,854 to 897,711 Atu3801 Atu3802: Atu3802 - proline/glycine betaine ABC transporter ATPase, at 897,704 to 898,537 Atu3802 Atu3803: Atu3803 - histidine ammonia-lyase, at 898,530 to 900,032 Atu3803 Atu3804: Atu3804 - permease, at 900,299 to 901,507 Atu3804 Position (kb) 898 899 900 901Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 897.530 kb on - strand, within Atu3801at 897.560 kb on + strand, within Atu3801at 897.560 kb on + strand, within Atu3801at 897.568 kb on - strand, within Atu3801at 897.612 kb on + strand, within Atu3801at 897.622 kb on + strand, within Atu3801at 897.671 kb on + strandat 897.761 kb on + strandat 897.766 kb on + strandat 897.766 kb on + strandat 897.766 kb on + strandat 897.773 kb on + strandat 897.781 kb on - strandat 897.876 kb on + strand, within Atu3802at 897.901 kb on + strand, within Atu3802at 897.974 kb on + strand, within Atu3802at 898.025 kb on + strand, within Atu3802at 898.026 kb on + strand, within Atu3802at 898.075 kb on - strand, within Atu3802at 898.075 kb on - strand, within Atu3802at 898.112 kb on - strand, within Atu3802at 898.126 kb on + strand, within Atu3802at 898.203 kb on + strand, within Atu3802at 898.203 kb on + strand, within Atu3802at 898.203 kb on + strand, within Atu3802at 898.264 kb on + strand, within Atu3802at 898.299 kb on + strand, within Atu3802at 898.321 kb on + strand, within Atu3802at 898.331 kb on + strand, within Atu3802at 898.331 kb on + strand, within Atu3802at 898.337 kb on + strand, within Atu3802at 898.342 kb on + strand, within Atu3802at 898.355 kb on - strand, within Atu3802at 898.462 kb on - strandat 898.462 kb on - strandat 898.540 kb on - strandat 898.586 kb on + strandat 898.600 kb on + strandat 898.608 kb on - strandat 898.735 kb on + strand, within Atu3803at 898.754 kb on + strand, within Atu3803at 898.778 kb on + strand, within Atu3803at 898.824 kb on + strand, within Atu3803at 898.874 kb on + strand, within Atu3803at 898.904 kb on + strand, within Atu3803at 898.957 kb on - strand, within Atu3803at 898.978 kb on + strand, within Atu3803at 898.978 kb on + strand, within Atu3803at 898.981 kb on - strand, within Atu3803at 898.983 kb on + strand, within Atu3803at 898.986 kb on - strand, within Atu3803at 898.986 kb on - strand, within Atu3803at 898.991 kb on - strand, within Atu3803at 898.996 kb on - strand, within Atu3803at 899.049 kb on - strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.056 kb on + strand, within Atu3803at 899.064 kb on - strand, within Atu3803at 899.064 kb on - strand, within Atu3803at 899.064 kb on - strand, within Atu3803at 899.064 kb on - strand, within Atu3803at 899.064 kb on - strand, within Atu3803at 899.064 kb on - strand, within Atu3803at 899.066 kb on - strand, within Atu3803at 899.096 kb on - strand, within Atu3803at 899.096 kb on - strand, within Atu3803at 899.106 kb on + strand, within Atu3803at 899.107 kb on - strand, within Atu3803at 899.119 kb on + strand, within Atu3803at 899.129 kb on + strand, within Atu3803at 899.129 kb on - strand, within Atu3803at 899.134 kb on + strand, within Atu3803at 899.134 kb on + strand, within Atu3803at 899.134 kb on + strand, within Atu3803at 899.137 kb on - strand, within Atu3803at 899.160 kb on + strand, within Atu3803at 899.195 kb on - strand, within Atu3803at 899.197 kb on + strand, within Atu3803at 899.265 kb on + strand, within Atu3803at 899.321 kb on - strand, within Atu3803at 899.341 kb on + strand, within Atu3803at 899.341 kb on + strand, within Atu3803at 899.349 kb on - strand, within Atu3803at 899.349 kb on - strand, within Atu3803at 899.349 kb on - strand, within Atu3803at 899.350 kb on + strand, within Atu3803at 899.350 kb on + strand, within Atu3803at 899.358 kb on - strand, within Atu3803at 899.396 kb on - strand, within Atu3803at 899.413 kb on - strand, within Atu3803at 899.418 kb on - strand, within Atu3803at 899.418 kb on - strand, within Atu3803at 899.835 kb on - strand, within Atu3803at 899.910 kb on - strandat 899.917 kb on + strandat 899.923 kb on - strandat 899.942 kb on + strandat 900.092 kb on + strandat 900.092 kb on + strandat 900.126 kb on - strandat 900.140 kb on + strandat 900.290 kb on - strandat 900.309 kb on - strandat 900.317 kb on - strandat 900.325 kb on - strandat 900.334 kb on + strandat 900.574 kb on + strand, within Atu3804at 900.674 kb on + strand, within Atu3804at 900.682 kb on - strand, within Atu3804at 900.696 kb on + strand, within Atu3804at 900.810 kb on + strand, within Atu3804at 900.864 kb on + strand, within Atu3804at 900.864 kb on + strand, within Atu3804at 900.872 kb on - strand, within Atu3804at 900.975 kb on + strand, within Atu3804at 900.981 kb on + strand, within Atu3804at 900.983 kb on - strand, within Atu3804at 901.006 kb on + strand, within Atu3804

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM
remove
897,530 - Atu3801 0.79 -0.3
897,560 + Atu3801 0.82 +0.7
897,560 + Atu3801 0.82 +0.3
897,568 - Atu3801 0.83 -0.0
897,612 + Atu3801 0.88 -1.0
897,622 + Atu3801 0.90 -0.2
897,671 + +0.0
897,761 + +0.5
897,766 + +0.0
897,766 + +0.5
897,766 + -0.2
897,773 + -0.0
897,781 - -0.2
897,876 + Atu3802 0.21 +0.1
897,901 + Atu3802 0.24 -0.5
897,974 + Atu3802 0.32 +0.2
898,025 + Atu3802 0.38 -0.1
898,026 + Atu3802 0.39 -0.6
898,075 - Atu3802 0.44 -0.9
898,075 - Atu3802 0.44 +0.8
898,112 - Atu3802 0.49 -0.6
898,126 + Atu3802 0.51 -0.5
898,203 + Atu3802 0.60 +0.1
898,203 + Atu3802 0.60 -0.1
898,203 + Atu3802 0.60 -0.2
898,264 + Atu3802 0.67 +0.2
898,299 + Atu3802 0.71 +0.0
898,321 + Atu3802 0.74 -0.1
898,331 + Atu3802 0.75 +1.1
898,331 + Atu3802 0.75 +0.1
898,337 + Atu3802 0.76 -2.0
898,342 + Atu3802 0.76 +0.9
898,355 - Atu3802 0.78 +0.8
898,462 - -0.1
898,462 - -0.3
898,540 - +0.1
898,586 + -0.9
898,600 + +0.1
898,608 - -0.6
898,735 + Atu3803 0.14 +0.1
898,754 + Atu3803 0.15 -0.8
898,778 + Atu3803 0.17 -0.3
898,824 + Atu3803 0.20 -0.1
898,874 + Atu3803 0.23 -0.0
898,904 + Atu3803 0.25 -0.1
898,957 - Atu3803 0.28 +0.1
898,978 + Atu3803 0.30 -0.2
898,978 + Atu3803 0.30 +0.1
898,981 - Atu3803 0.30 -0.4
898,983 + Atu3803 0.30 +0.4
898,986 - Atu3803 0.30 +0.4
898,986 - Atu3803 0.30 -0.3
898,991 - Atu3803 0.31 +0.1
898,996 - Atu3803 0.31 -0.3
899,049 - Atu3803 0.35 +0.3
899,056 + Atu3803 0.35 -1.7
899,056 + Atu3803 0.35 -1.1
899,056 + Atu3803 0.35 -0.0
899,056 + Atu3803 0.35 +0.2
899,056 + Atu3803 0.35 +0.4
899,056 + Atu3803 0.35 +1.0
899,056 + Atu3803 0.35 +0.2
899,056 + Atu3803 0.35 -0.6
899,056 + Atu3803 0.35 -0.1
899,064 - Atu3803 0.36 +0.6
899,064 - Atu3803 0.36 +1.9
899,064 - Atu3803 0.36 -0.1
899,064 - Atu3803 0.36 -0.6
899,064 - Atu3803 0.36 +0.1
899,064 - Atu3803 0.36 -2.8
899,066 - Atu3803 0.36 +0.1
899,096 - Atu3803 0.38 -0.1
899,096 - Atu3803 0.38 +0.5
899,106 + Atu3803 0.38 +0.5
899,107 - Atu3803 0.38 +0.0
899,119 + Atu3803 0.39 -1.7
899,129 + Atu3803 0.40 -1.3
899,129 - Atu3803 0.40 -0.9
899,134 + Atu3803 0.40 +0.1
899,134 + Atu3803 0.40 -0.4
899,134 + Atu3803 0.40 -1.1
899,137 - Atu3803 0.40 -0.1
899,160 + Atu3803 0.42 +0.3
899,195 - Atu3803 0.44 -0.4
899,197 + Atu3803 0.44 -0.6
899,265 + Atu3803 0.49 -0.8
899,321 - Atu3803 0.53 +0.7
899,341 + Atu3803 0.54 -0.3
899,341 + Atu3803 0.54 -0.4
899,349 - Atu3803 0.54 +0.1
899,349 - Atu3803 0.54 +0.1
899,349 - Atu3803 0.54 -0.1
899,350 + Atu3803 0.55 -0.6
899,350 + Atu3803 0.55 +0.7
899,358 - Atu3803 0.55 -0.4
899,396 - Atu3803 0.58 +0.1
899,413 - Atu3803 0.59 -1.6
899,418 - Atu3803 0.59 -1.8
899,418 - Atu3803 0.59 +0.3
899,835 - Atu3803 0.87 -0.7
899,910 - +0.3
899,917 + +0.5
899,923 - -0.5
899,942 + -0.2
900,092 + +1.4
900,092 + -0.3
900,126 - -0.2
900,140 + -0.5
900,290 - -0.2
900,309 - +0.3
900,317 - -0.4
900,325 - -0.4
900,334 + -0.1
900,574 + Atu3804 0.23 +0.4
900,674 + Atu3804 0.31 +0.2
900,682 - Atu3804 0.32 -0.3
900,696 + Atu3804 0.33 -0.8
900,810 + Atu3804 0.42 +0.4
900,864 + Atu3804 0.47 +0.2
900,864 + Atu3804 0.47 -1.4
900,872 - Atu3804 0.47 -0.3
900,975 + Atu3804 0.56 +0.6
900,981 + Atu3804 0.56 +1.0
900,983 - Atu3804 0.57 +0.4
901,006 + Atu3804 0.58 +0.3

Or see this region's nucleotide sequence