Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3800 and Atu3801 are separated by 95 nucleotides Atu3801 and Atu3802 overlap by 8 nucleotides Atu3802 and Atu3803 overlap by 8 nucleotides
Atu3800: Atu3800 - proline/glycine betaine ABC transporter substrate-binding protein, at 895,721 to 896,758
Atu3800
Atu3801: Atu3801 - proline/glycine betaine ABC transporter permease, at 896,854 to 897,711
Atu3801
Atu3802: Atu3802 - proline/glycine betaine ABC transporter ATPase, at 897,704 to 898,537
Atu3802
Atu3803: Atu3803 - histidine ammonia-lyase, at 898,530 to 900,032
Atu3803
Position (kb) 896
897
898 Strain fitness (log2 ratio) -2
-1
0
1
2 at 895.882 kb on + strand, within Atu3800 at 895.899 kb on - strand, within Atu3800 at 895.899 kb on - strand, within Atu3800 at 895.927 kb on + strand, within Atu3800 at 895.941 kb on + strand, within Atu3800 at 895.941 kb on + strand, within Atu3800 at 896.033 kb on + strand, within Atu3800 at 896.046 kb on - strand, within Atu3800 at 896.080 kb on - strand, within Atu3800 at 896.082 kb on + strand, within Atu3800 at 896.101 kb on + strand, within Atu3800 at 896.101 kb on + strand, within Atu3800 at 896.144 kb on + strand, within Atu3800 at 896.144 kb on + strand, within Atu3800 at 896.199 kb on - strand, within Atu3800 at 896.199 kb on - strand, within Atu3800 at 896.251 kb on - strand, within Atu3800 at 896.258 kb on - strand, within Atu3800 at 896.275 kb on + strand, within Atu3800 at 896.275 kb on + strand, within Atu3800 at 896.362 kb on + strand, within Atu3800 at 896.362 kb on + strand, within Atu3800 at 896.370 kb on - strand, within Atu3800 at 896.459 kb on - strand, within Atu3800 at 896.479 kb on - strand, within Atu3800 at 896.530 kb on + strand, within Atu3800 at 896.530 kb on + strand, within Atu3800 at 896.537 kb on + strand, within Atu3800 at 896.622 kb on - strand, within Atu3800 at 896.632 kb on - strand, within Atu3800 at 896.639 kb on - strand, within Atu3800 at 896.686 kb on + strand at 896.700 kb on - strand at 896.724 kb on + strand at 896.760 kb on - strand at 896.797 kb on + strand at 896.802 kb on + strand at 896.805 kb on - strand at 896.843 kb on + strand at 896.851 kb on - strand at 896.912 kb on + strand at 896.930 kb on - strand at 897.009 kb on - strand, within Atu3801 at 897.116 kb on + strand, within Atu3801 at 897.137 kb on + strand, within Atu3801 at 897.292 kb on + strand, within Atu3801 at 897.298 kb on - strand, within Atu3801 at 897.300 kb on - strand, within Atu3801 at 897.309 kb on + strand, within Atu3801 at 897.315 kb on + strand, within Atu3801 at 897.403 kb on + strand, within Atu3801 at 897.413 kb on - strand, within Atu3801 at 897.442 kb on - strand, within Atu3801 at 897.497 kb on - strand, within Atu3801 at 897.522 kb on + strand, within Atu3801 at 897.524 kb on + strand, within Atu3801 at 897.530 kb on - strand, within Atu3801 at 897.560 kb on + strand, within Atu3801 at 897.560 kb on + strand, within Atu3801 at 897.568 kb on - strand, within Atu3801 at 897.612 kb on + strand, within Atu3801 at 897.622 kb on + strand, within Atu3801 at 897.671 kb on + strand at 897.761 kb on + strand at 897.766 kb on + strand at 897.766 kb on + strand at 897.766 kb on + strand at 897.773 kb on + strand at 897.781 kb on - strand at 897.876 kb on + strand, within Atu3802 at 897.901 kb on + strand, within Atu3802 at 897.974 kb on + strand, within Atu3802 at 898.025 kb on + strand, within Atu3802 at 898.026 kb on + strand, within Atu3802 at 898.075 kb on - strand, within Atu3802 at 898.075 kb on - strand, within Atu3802 at 898.112 kb on - strand, within Atu3802 at 898.126 kb on + strand, within Atu3802 at 898.203 kb on + strand, within Atu3802 at 898.203 kb on + strand, within Atu3802 at 898.203 kb on + strand, within Atu3802 at 898.264 kb on + strand, within Atu3802 at 898.299 kb on + strand, within Atu3802 at 898.321 kb on + strand, within Atu3802 at 898.331 kb on + strand, within Atu3802 at 898.331 kb on + strand, within Atu3802 at 898.337 kb on + strand, within Atu3802 at 898.342 kb on + strand, within Atu3802 at 898.355 kb on - strand, within Atu3802 at 898.462 kb on - strand at 898.462 kb on - strand at 898.540 kb on - strand at 898.586 kb on + strand at 898.600 kb on + strand at 898.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 895,882 + Atu3800 0.16 +0.0 895,899 - Atu3800 0.17 -0.9 895,899 - Atu3800 0.17 -0.3 895,927 + Atu3800 0.20 -0.0 895,941 + Atu3800 0.21 +0.7 895,941 + Atu3800 0.21 -0.0 896,033 + Atu3800 0.30 -0.9 896,046 - Atu3800 0.31 -0.3 896,080 - Atu3800 0.35 +0.5 896,082 + Atu3800 0.35 +0.5 896,101 + Atu3800 0.37 -0.9 896,101 + Atu3800 0.37 -0.0 896,144 + Atu3800 0.41 +0.3 896,144 + Atu3800 0.41 -0.4 896,199 - Atu3800 0.46 +0.2 896,199 - Atu3800 0.46 -0.2 896,251 - Atu3800 0.51 +0.6 896,258 - Atu3800 0.52 -0.3 896,275 + Atu3800 0.53 -0.6 896,275 + Atu3800 0.53 -0.1 896,362 + Atu3800 0.62 -0.1 896,362 + Atu3800 0.62 -0.1 896,370 - Atu3800 0.63 +0.1 896,459 - Atu3800 0.71 +1.6 896,479 - Atu3800 0.73 -0.9 896,530 + Atu3800 0.78 -0.2 896,530 + Atu3800 0.78 -1.3 896,537 + Atu3800 0.79 +0.2 896,622 - Atu3800 0.87 +0.5 896,632 - Atu3800 0.88 +2.7 896,639 - Atu3800 0.88 -0.7 896,686 + +0.3 896,700 - +0.2 896,724 + -1.3 896,760 - -0.1 896,797 + +0.4 896,802 + +1.1 896,805 - +0.0 896,843 + -0.2 896,851 - -0.1 896,912 + +0.2 896,930 - +0.2 897,009 - Atu3801 0.18 -2.0 897,116 + Atu3801 0.31 -0.2 897,137 + Atu3801 0.33 -0.8 897,292 + Atu3801 0.51 -0.6 897,298 - Atu3801 0.52 +2.4 897,300 - Atu3801 0.52 +0.1 897,309 + Atu3801 0.53 +0.2 897,315 + Atu3801 0.54 +0.2 897,403 + Atu3801 0.64 -0.2 897,413 - Atu3801 0.65 +0.6 897,442 - Atu3801 0.69 -0.6 897,497 - Atu3801 0.75 +0.1 897,522 + Atu3801 0.78 -0.1 897,524 + Atu3801 0.78 -1.3 897,530 - Atu3801 0.79 -0.3 897,560 + Atu3801 0.82 +0.7 897,560 + Atu3801 0.82 +0.3 897,568 - Atu3801 0.83 -0.0 897,612 + Atu3801 0.88 -1.0 897,622 + Atu3801 0.90 -0.2 897,671 + +0.0 897,761 + +0.5 897,766 + +0.0 897,766 + +0.5 897,766 + -0.2 897,773 + -0.0 897,781 - -0.2 897,876 + Atu3802 0.21 +0.1 897,901 + Atu3802 0.24 -0.5 897,974 + Atu3802 0.32 +0.2 898,025 + Atu3802 0.38 -0.1 898,026 + Atu3802 0.39 -0.6 898,075 - Atu3802 0.44 -0.9 898,075 - Atu3802 0.44 +0.8 898,112 - Atu3802 0.49 -0.6 898,126 + Atu3802 0.51 -0.5 898,203 + Atu3802 0.60 +0.1 898,203 + Atu3802 0.60 -0.1 898,203 + Atu3802 0.60 -0.2 898,264 + Atu3802 0.67 +0.2 898,299 + Atu3802 0.71 +0.0 898,321 + Atu3802 0.74 -0.1 898,331 + Atu3802 0.75 +1.1 898,331 + Atu3802 0.75 +0.1 898,337 + Atu3802 0.76 -2.0 898,342 + Atu3802 0.76 +0.9 898,355 - Atu3802 0.78 +0.8 898,462 - -0.1 898,462 - -0.3 898,540 - +0.1 898,586 + -0.9 898,600 + +0.1 898,608 - -0.6
Or see this region's nucleotide sequence