Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3633 and Atu3634 are separated by 187 nucleotides Atu3634 and Atu3635 are separated by 112 nucleotides
Atu3633: Atu3633 - hypothetical protein, at 684,795 to 685,919
Atu3633
Atu3634: Atu3634 - penicillin-binding protein dacf precursor, at 686,107 to 687,276
Atu3634
Atu3635: Atu3635 - amidohydrolase, at 687,389 to 688,552
Atu3635
Position (kb) 686
687
688 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 685.204 kb on - strand, within Atu3633 at 685.256 kb on - strand, within Atu3633 at 685.438 kb on + strand, within Atu3633 at 685.450 kb on - strand, within Atu3633 at 685.584 kb on + strand, within Atu3633 at 685.650 kb on - strand, within Atu3633 at 685.687 kb on + strand, within Atu3633 at 685.697 kb on + strand, within Atu3633 at 685.705 kb on - strand, within Atu3633 at 685.719 kb on - strand, within Atu3633 at 685.725 kb on + strand, within Atu3633 at 685.736 kb on + strand, within Atu3633 at 685.827 kb on + strand at 685.981 kb on - strand at 686.573 kb on + strand, within Atu3634 at 686.701 kb on + strand, within Atu3634 at 686.719 kb on - strand, within Atu3634 at 686.752 kb on - strand, within Atu3634 at 686.753 kb on - strand, within Atu3634 at 686.785 kb on - strand, within Atu3634 at 686.977 kb on - strand, within Atu3634 at 687.174 kb on + strand at 687.336 kb on - strand at 687.554 kb on - strand, within Atu3635 at 687.574 kb on + strand, within Atu3635 at 687.714 kb on + strand, within Atu3635 at 687.716 kb on + strand, within Atu3635 at 687.724 kb on - strand, within Atu3635 at 687.837 kb on + strand, within Atu3635 at 687.845 kb on - strand, within Atu3635 at 687.873 kb on - strand, within Atu3635 at 687.874 kb on - strand, within Atu3635 at 687.874 kb on - strand, within Atu3635 at 687.970 kb on - strand, within Atu3635 at 687.989 kb on + strand, within Atu3635 at 688.073 kb on - strand, within Atu3635 at 688.085 kb on + strand, within Atu3635 at 688.093 kb on - strand, within Atu3635 at 688.226 kb on + strand, within Atu3635 at 688.227 kb on + strand, within Atu3635 at 688.227 kb on + strand, within Atu3635 at 688.235 kb on - strand, within Atu3635 at 688.273 kb on + strand, within Atu3635 at 688.273 kb on + strand, within Atu3635 at 688.273 kb on + strand, within Atu3635
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 685,204 - Atu3633 0.36 +0.1 685,256 - Atu3633 0.41 +2.3 685,438 + Atu3633 0.57 -1.0 685,450 - Atu3633 0.58 -0.2 685,584 + Atu3633 0.70 -0.7 685,650 - Atu3633 0.76 +0.4 685,687 + Atu3633 0.79 -0.1 685,697 + Atu3633 0.80 -1.3 685,705 - Atu3633 0.81 -1.1 685,719 - Atu3633 0.82 -0.0 685,725 + Atu3633 0.83 -0.7 685,736 + Atu3633 0.84 +1.5 685,827 + -0.3 685,981 - -0.4 686,573 + Atu3634 0.40 +7.3 686,701 + Atu3634 0.51 +7.2 686,719 - Atu3634 0.52 +7.2 686,752 - Atu3634 0.55 +7.4 686,753 - Atu3634 0.55 +7.1 686,785 - Atu3634 0.58 +6.8 686,977 - Atu3634 0.74 +7.5 687,174 + +7.5 687,336 - +0.2 687,554 - Atu3635 0.14 +0.5 687,574 + Atu3635 0.16 +0.9 687,714 + Atu3635 0.28 -0.1 687,716 + Atu3635 0.28 +0.5 687,724 - Atu3635 0.29 -0.6 687,837 + Atu3635 0.38 +1.2 687,845 - Atu3635 0.39 -0.1 687,873 - Atu3635 0.42 -1.5 687,874 - Atu3635 0.42 -0.2 687,874 - Atu3635 0.42 -0.2 687,970 - Atu3635 0.50 +0.0 687,989 + Atu3635 0.52 +0.2 688,073 - Atu3635 0.59 -0.4 688,085 + Atu3635 0.60 -0.2 688,093 - Atu3635 0.60 -0.6 688,226 + Atu3635 0.72 +0.1 688,227 + Atu3635 0.72 -0.5 688,227 + Atu3635 0.72 -0.3 688,235 - Atu3635 0.73 +1.6 688,273 + Atu3635 0.76 -0.8 688,273 + Atu3635 0.76 +0.1 688,273 + Atu3635 0.76 +0.4
Or see this region's nucleotide sequence