Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3605 and Atu3606 are separated by 201 nucleotides Atu3606 and Atu3607 overlap by 8 nucleotides Atu3607 and Atu3608 are separated by 113 nucleotides Atu3608 and Atu3609 are separated by 114 nucleotides
Atu3605: Atu3605 - hypothetical protein, at 660,589 to 661,260
Atu3605
Atu3606: Atu3606 - cell division ATP-binding protein, at 661,462 to 662,121
Atu3606
Atu3607: Atu3607 - cell division protein, at 662,114 to 663,121
Atu3607
Atu3608: Atu3608 - hypothetical protein, at 663,235 to 663,966
Atu3608
Atu3609: Atu3609 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 664,081 to 664,878
Atu3609
Position (kb) 662
663
664 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 661.187 kb on + strand, within Atu3605 at 661.250 kb on + strand at 661.351 kb on - strand at 661.423 kb on - strand at 661.459 kb on + strand at 663.267 kb on - strand at 663.340 kb on - strand, within Atu3608 at 663.340 kb on - strand, within Atu3608 at 663.445 kb on + strand, within Atu3608 at 663.470 kb on + strand, within Atu3608 at 663.492 kb on + strand, within Atu3608 at 663.492 kb on + strand, within Atu3608 at 663.505 kb on - strand, within Atu3608 at 663.529 kb on + strand, within Atu3608 at 663.579 kb on - strand, within Atu3608 at 663.833 kb on + strand, within Atu3608 at 663.912 kb on + strand at 663.920 kb on - strand at 663.923 kb on + strand at 664.011 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 661,187 + Atu3605 0.89 -0.6 661,250 + -0.8 661,351 - +0.9 661,423 - +0.9 661,459 + +0.3 663,267 - +7.8 663,340 - Atu3608 0.14 +8.0 663,340 - Atu3608 0.14 +8.0 663,445 + Atu3608 0.29 +7.9 663,470 + Atu3608 0.32 +7.4 663,492 + Atu3608 0.35 +7.6 663,492 + Atu3608 0.35 +7.8 663,505 - Atu3608 0.37 +7.7 663,529 + Atu3608 0.40 +8.0 663,579 - Atu3608 0.47 +6.8 663,833 + Atu3608 0.82 +7.8 663,912 + +1.8 663,920 - +1.6 663,923 + +0.3 664,011 + +4.8
Or see this region's nucleotide sequence