Strain Fitness in Agrobacterium fabrum C58 around Atu1127

Experiment: R2A with Vancomycin 0.009 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1125 and Atu1126 are separated by 52 nucleotidesAtu1126 and Atu1127 are separated by 4 nucleotidesAtu1127 and Atu1128 overlap by 1 nucleotidesAtu1128 and Atu1129 are separated by 102 nucleotides Atu1125: Atu1125 - ABC transporter, membrane spanning protein, at 1,115,058 to 1,115,954 Atu1125 Atu1126: Atu1126 - molybdopterin converting factor, large subunit, at 1,116,007 to 1,116,474 Atu1126 Atu1127: Atu1127 - molybdopterin converting factor small subunit, at 1,116,479 to 1,116,733 Atu1127 Atu1128: Atu1128 - phosphatidylglycerophosphate synthase, at 1,116,733 to 1,117,320 Atu1128 Atu1129: Atu1129 - excinuclease ABC chain C, at 1,117,423 to 1,119,351 Atu1129 Position (kb) 1116 1117Strain fitness (log2 ratio) -1 0 1at 1115.641 kb on - strand, within Atu1125at 1115.666 kb on + strand, within Atu1125at 1115.674 kb on - strand, within Atu1125at 1115.810 kb on + strand, within Atu1125at 1116.027 kb on - strandat 1116.076 kb on + strand, within Atu1126at 1116.110 kb on + strand, within Atu1126at 1116.175 kb on + strand, within Atu1126at 1116.230 kb on - strand, within Atu1126at 1116.243 kb on + strand, within Atu1126at 1116.307 kb on + strand, within Atu1126at 1116.333 kb on - strand, within Atu1126at 1116.587 kb on + strand, within Atu1127at 1116.595 kb on - strand, within Atu1127at 1117.651 kb on + strand, within Atu1129

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM
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1,115,641 - Atu1125 0.65 -1.4
1,115,666 + Atu1125 0.68 -0.9
1,115,674 - Atu1125 0.69 -0.4
1,115,810 + Atu1125 0.84 +0.4
1,116,027 - -0.2
1,116,076 + Atu1126 0.15 -0.3
1,116,110 + Atu1126 0.22 +0.3
1,116,175 + Atu1126 0.36 +0.5
1,116,230 - Atu1126 0.48 -0.4
1,116,243 + Atu1126 0.50 -0.0
1,116,307 + Atu1126 0.64 +0.2
1,116,333 - Atu1126 0.70 +1.0
1,116,587 + Atu1127 0.42 -1.7
1,116,595 - Atu1127 0.45 -0.8
1,117,651 + Atu1129 0.12 -1.4

Or see this region's nucleotide sequence