Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1125 and Atu1126 are separated by 52 nucleotides Atu1126 and Atu1127 are separated by 4 nucleotides Atu1127 and Atu1128 overlap by 1 nucleotides Atu1128 and Atu1129 are separated by 102 nucleotides
Atu1125: Atu1125 - ABC transporter, membrane spanning protein, at 1,115,058 to 1,115,954
Atu1125
Atu1126: Atu1126 - molybdopterin converting factor, large subunit, at 1,116,007 to 1,116,474
Atu1126
Atu1127: Atu1127 - molybdopterin converting factor small subunit, at 1,116,479 to 1,116,733
Atu1127
Atu1128: Atu1128 - phosphatidylglycerophosphate synthase, at 1,116,733 to 1,117,320
Atu1128
Atu1129: Atu1129 - excinuclease ABC chain C, at 1,117,423 to 1,119,351
Atu1129
Position (kb)
1116
1117 Strain fitness (log2 ratio)
-1
0
1 at 1115.641 kb on - strand, within Atu1125 at 1115.666 kb on + strand, within Atu1125 at 1115.674 kb on - strand, within Atu1125 at 1115.810 kb on + strand, within Atu1125 at 1116.027 kb on - strand at 1116.076 kb on + strand, within Atu1126 at 1116.110 kb on + strand, within Atu1126 at 1116.175 kb on + strand, within Atu1126 at 1116.230 kb on - strand, within Atu1126 at 1116.243 kb on + strand, within Atu1126 at 1116.307 kb on + strand, within Atu1126 at 1116.333 kb on - strand, within Atu1126 at 1116.587 kb on + strand, within Atu1127 at 1116.595 kb on - strand, within Atu1127 at 1117.651 kb on + strand, within Atu1129
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 1,115,641 - Atu1125 0.65 -1.4 1,115,666 + Atu1125 0.68 -0.9 1,115,674 - Atu1125 0.69 -0.4 1,115,810 + Atu1125 0.84 +0.4 1,116,027 - -0.2 1,116,076 + Atu1126 0.15 -0.3 1,116,110 + Atu1126 0.22 +0.3 1,116,175 + Atu1126 0.36 +0.5 1,116,230 - Atu1126 0.48 -0.4 1,116,243 + Atu1126 0.50 -0.0 1,116,307 + Atu1126 0.64 +0.2 1,116,333 - Atu1126 0.70 +1.0 1,116,587 + Atu1127 0.42 -1.7 1,116,595 - Atu1127 0.45 -0.8 1,117,651 + Atu1129 0.12 -1.4
Or see this region's nucleotide sequence