Strain Fitness in Agrobacterium fabrum C58 around Atu0816

Experiment: R2A with Vancomycin 0.009 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0814 and Atu0815 are separated by 426 nucleotidesAtu0815 and Atu0816 are separated by 221 nucleotidesAtu0816 and Atu0817 overlap by 1 nucleotidesAtu0817 and Atu0818 are separated by 28 nucleotides Atu0814: Atu0814 - tRNA-Pro, at 813,141 to 813,217 Atu0814 Atu0815: Atu0815 - hypothetical protein, at 813,644 to 813,805 Atu0815 Atu0816: Atu0816 - sulfate adenylate transferase, subunit 1, at 814,027 to 815,511 Atu0816 Atu0817: Atu0817 - sulfate adenylate transferase, subunit 2, at 815,511 to 816,464 Atu0817 Atu0818: Atu0818 - phosphoadenosine phosphosulfate reductase, at 816,493 to 817,254 Atu0818 Position (kb) 814 815 816Strain fitness (log2 ratio) -2 -1 0 1 2at 813.145 kb on + strandat 813.145 kb on + strandat 813.145 kb on + strandat 813.218 kb on + strandat 813.594 kb on + strandat 813.597 kb on - strandat 813.602 kb on - strandat 813.678 kb on + strand, within Atu0815at 813.702 kb on - strand, within Atu0815at 813.704 kb on + strand, within Atu0815at 813.712 kb on - strand, within Atu0815at 813.780 kb on + strand, within Atu0815at 813.840 kb on + strandat 813.885 kb on + strandat 813.893 kb on - strandat 813.893 kb on - strandat 814.104 kb on - strandat 814.112 kb on + strandat 814.157 kb on - strandat 814.163 kb on + strandat 814.168 kb on + strandat 814.193 kb on - strand, within Atu0816at 814.198 kb on - strand, within Atu0816at 814.210 kb on - strand, within Atu0816at 814.210 kb on - strand, within Atu0816at 814.251 kb on + strand, within Atu0816at 814.259 kb on - strand, within Atu0816at 814.273 kb on + strand, within Atu0816at 814.278 kb on + strand, within Atu0816at 814.330 kb on - strand, within Atu0816at 814.359 kb on - strand, within Atu0816at 814.382 kb on + strand, within Atu0816at 814.390 kb on - strand, within Atu0816at 814.479 kb on - strand, within Atu0816at 814.481 kb on + strand, within Atu0816at 814.518 kb on + strand, within Atu0816at 814.518 kb on + strand, within Atu0816at 814.526 kb on - strand, within Atu0816at 814.560 kb on - strand, within Atu0816at 814.602 kb on - strand, within Atu0816at 814.638 kb on + strand, within Atu0816at 814.732 kb on + strand, within Atu0816at 814.764 kb on - strand, within Atu0816at 814.766 kb on - strand, within Atu0816at 814.783 kb on - strand, within Atu0816at 814.788 kb on - strand, within Atu0816at 814.793 kb on - strand, within Atu0816at 814.955 kb on - strand, within Atu0816at 815.071 kb on - strand, within Atu0816at 815.075 kb on - strand, within Atu0816at 815.159 kb on - strand, within Atu0816at 815.219 kb on + strand, within Atu0816at 815.263 kb on - strand, within Atu0816at 815.291 kb on - strand, within Atu0816at 815.345 kb on - strand, within Atu0816at 815.354 kb on + strand, within Atu0816at 815.369 kb on - strandat 815.469 kb on - strandat 815.627 kb on + strand, within Atu0817at 815.768 kb on + strand, within Atu0817at 815.770 kb on + strand, within Atu0817at 815.770 kb on + strand, within Atu0817at 815.788 kb on + strand, within Atu0817at 815.788 kb on + strand, within Atu0817at 815.921 kb on + strand, within Atu0817at 815.922 kb on - strand, within Atu0817at 815.979 kb on - strand, within Atu0817at 815.979 kb on - strand, within Atu0817at 815.984 kb on - strand, within Atu0817at 816.002 kb on - strand, within Atu0817at 816.041 kb on + strand, within Atu0817at 816.068 kb on + strand, within Atu0817at 816.087 kb on + strand, within Atu0817at 816.143 kb on + strand, within Atu0817at 816.144 kb on - strand, within Atu0817at 816.144 kb on - strand, within Atu0817at 816.316 kb on + strand, within Atu0817at 816.324 kb on - strand, within Atu0817at 816.427 kb on + strandat 816.432 kb on - strandat 816.444 kb on + strandat 816.454 kb on + strandat 816.462 kb on - strandat 816.462 kb on - strandat 816.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM
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813,145 + -0.6
813,145 + -2.0
813,145 + -0.6
813,218 + +0.3
813,594 + +0.0
813,597 - +0.4
813,602 - -0.2
813,678 + Atu0815 0.21 -0.7
813,702 - Atu0815 0.36 -0.1
813,704 + Atu0815 0.37 -0.5
813,712 - Atu0815 0.42 +0.7
813,780 + Atu0815 0.84 +0.8
813,840 + +0.1
813,885 + +0.0
813,893 - -0.4
813,893 - +1.6
814,104 - +0.8
814,112 + -0.4
814,157 - -0.5
814,163 + -0.1
814,168 + +0.2
814,193 - Atu0816 0.11 -2.2
814,198 - Atu0816 0.12 -0.6
814,210 - Atu0816 0.12 -0.8
814,210 - Atu0816 0.12 -0.2
814,251 + Atu0816 0.15 -0.6
814,259 - Atu0816 0.16 +0.6
814,273 + Atu0816 0.17 +0.6
814,278 + Atu0816 0.17 -0.9
814,330 - Atu0816 0.20 -0.8
814,359 - Atu0816 0.22 -0.1
814,382 + Atu0816 0.24 -0.1
814,390 - Atu0816 0.24 +0.1
814,479 - Atu0816 0.30 -2.0
814,481 + Atu0816 0.31 -0.5
814,518 + Atu0816 0.33 -1.1
814,518 + Atu0816 0.33 -0.9
814,526 - Atu0816 0.34 -1.2
814,560 - Atu0816 0.36 -0.3
814,602 - Atu0816 0.39 +0.1
814,638 + Atu0816 0.41 -0.4
814,732 + Atu0816 0.47 -0.2
814,764 - Atu0816 0.50 +0.8
814,766 - Atu0816 0.50 -0.4
814,783 - Atu0816 0.51 -1.1
814,788 - Atu0816 0.51 -0.4
814,793 - Atu0816 0.52 -0.7
814,955 - Atu0816 0.62 +0.4
815,071 - Atu0816 0.70 -0.6
815,075 - Atu0816 0.71 +0.1
815,159 - Atu0816 0.76 -0.8
815,219 + Atu0816 0.80 -0.4
815,263 - Atu0816 0.83 +0.0
815,291 - Atu0816 0.85 -0.2
815,345 - Atu0816 0.89 +1.1
815,354 + Atu0816 0.89 -0.6
815,369 - -0.2
815,469 - -0.3
815,627 + Atu0817 0.12 -0.3
815,768 + Atu0817 0.27 -1.7
815,770 + Atu0817 0.27 +1.2
815,770 + Atu0817 0.27 -2.1
815,788 + Atu0817 0.29 -0.9
815,788 + Atu0817 0.29 -0.6
815,921 + Atu0817 0.43 -0.9
815,922 - Atu0817 0.43 -1.2
815,979 - Atu0817 0.49 +0.4
815,979 - Atu0817 0.49 -0.3
815,984 - Atu0817 0.50 -0.4
816,002 - Atu0817 0.51 +0.4
816,041 + Atu0817 0.56 -0.3
816,068 + Atu0817 0.58 -0.5
816,087 + Atu0817 0.60 +2.0
816,143 + Atu0817 0.66 -0.5
816,144 - Atu0817 0.66 -0.7
816,144 - Atu0817 0.66 -0.3
816,316 + Atu0817 0.84 -0.1
816,324 - Atu0817 0.85 -1.1
816,427 + -0.4
816,432 - +1.4
816,444 + -1.3
816,454 + +0.0
816,462 - -0.9
816,462 - -1.0
816,462 - -0.4

Or see this region's nucleotide sequence