Strain Fitness in Agrobacterium fabrum C58 around Atu0574

Experiment: R2A with Vancomycin 0.009 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0573 and Atu0574 are separated by 105 nucleotidesAtu0574 and Atu0575 are separated by 22 nucleotides Atu0573: Atu0573 - transcriptional regulator, at 558,161 to 558,832 Atu0573 Atu0574: Atu0574 - flagellar hook protein, at 558,938 to 560,215 Atu0574 Atu0575: Atu0575 - flagellar hook associated protein, at 560,238 to 561,716 Atu0575 Position (kb) 558 559 560 561Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 558.190 kb on + strandat 558.198 kb on - strandat 558.198 kb on - strandat 558.271 kb on + strand, within Atu0573at 558.279 kb on - strand, within Atu0573at 558.372 kb on + strand, within Atu0573at 558.377 kb on + strand, within Atu0573at 558.430 kb on + strand, within Atu0573at 558.438 kb on - strand, within Atu0573at 558.452 kb on + strand, within Atu0573at 558.476 kb on + strand, within Atu0573at 558.500 kb on + strand, within Atu0573at 558.558 kb on - strand, within Atu0573at 558.576 kb on + strand, within Atu0573at 558.596 kb on + strand, within Atu0573at 558.604 kb on - strand, within Atu0573at 558.604 kb on - strand, within Atu0573at 558.638 kb on - strand, within Atu0573at 558.777 kb on + strandat 558.875 kb on - strandat 558.879 kb on + strandat 558.890 kb on + strandat 559.098 kb on + strand, within Atu0574at 559.150 kb on + strand, within Atu0574at 559.159 kb on + strand, within Atu0574at 559.167 kb on - strand, within Atu0574at 559.172 kb on - strand, within Atu0574at 559.185 kb on + strand, within Atu0574at 559.203 kb on - strand, within Atu0574at 559.214 kb on + strand, within Atu0574at 559.227 kb on - strand, within Atu0574at 559.241 kb on - strand, within Atu0574at 559.241 kb on - strand, within Atu0574at 559.278 kb on + strand, within Atu0574at 559.278 kb on + strand, within Atu0574at 559.326 kb on + strand, within Atu0574at 559.357 kb on - strand, within Atu0574at 559.410 kb on + strand, within Atu0574at 559.413 kb on + strand, within Atu0574at 559.418 kb on - strand, within Atu0574at 559.494 kb on - strand, within Atu0574at 559.534 kb on - strand, within Atu0574at 559.564 kb on + strand, within Atu0574at 559.653 kb on + strand, within Atu0574at 559.675 kb on + strand, within Atu0574at 559.714 kb on + strand, within Atu0574at 559.714 kb on + strand, within Atu0574at 559.714 kb on + strand, within Atu0574at 559.756 kb on + strand, within Atu0574at 559.756 kb on + strand, within Atu0574at 559.756 kb on + strand, within Atu0574at 559.764 kb on - strand, within Atu0574at 559.790 kb on - strand, within Atu0574at 559.798 kb on + strand, within Atu0574at 559.800 kb on - strand, within Atu0574at 559.840 kb on + strand, within Atu0574at 559.862 kb on - strand, within Atu0574at 559.864 kb on + strand, within Atu0574at 559.872 kb on - strand, within Atu0574at 559.958 kb on + strand, within Atu0574at 560.055 kb on + strand, within Atu0574at 560.055 kb on + strand, within Atu0574at 560.055 kb on + strand, within Atu0574at 560.080 kb on + strand, within Atu0574at 560.218 kb on - strandat 560.241 kb on - strandat 560.248 kb on + strandat 560.256 kb on - strandat 560.263 kb on - strandat 560.287 kb on + strandat 560.289 kb on + strandat 560.289 kb on + strandat 560.295 kb on - strandat 560.412 kb on - strand, within Atu0575at 560.414 kb on + strand, within Atu0575at 560.422 kb on - strand, within Atu0575at 560.430 kb on - strand, within Atu0575at 560.449 kb on - strand, within Atu0575at 560.470 kb on + strand, within Atu0575at 560.478 kb on - strand, within Atu0575at 560.478 kb on - strand, within Atu0575at 560.478 kb on - strand, within Atu0575at 560.485 kb on + strand, within Atu0575at 560.488 kb on - strand, within Atu0575at 560.493 kb on - strand, within Atu0575at 560.558 kb on + strand, within Atu0575at 560.581 kb on + strand, within Atu0575at 560.581 kb on + strand, within Atu0575at 560.663 kb on + strand, within Atu0575at 560.675 kb on + strand, within Atu0575at 560.677 kb on + strand, within Atu0575at 560.731 kb on - strand, within Atu0575at 560.752 kb on - strand, within Atu0575at 560.801 kb on - strand, within Atu0575at 560.894 kb on + strand, within Atu0575at 560.916 kb on - strand, within Atu0575at 560.918 kb on + strand, within Atu0575at 560.918 kb on + strand, within Atu0575at 560.918 kb on + strand, within Atu0575at 560.918 kb on + strand, within Atu0575at 560.926 kb on - strand, within Atu0575at 560.926 kb on - strand, within Atu0575at 560.984 kb on - strand, within Atu0575at 561.104 kb on - strand, within Atu0575at 561.126 kb on + strand, within Atu0575at 561.129 kb on + strand, within Atu0575at 561.192 kb on - strand, within Atu0575

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM
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558,190 + +2.8
558,198 - +1.3
558,198 - +2.0
558,271 + Atu0573 0.16 +2.4
558,279 - Atu0573 0.18 +1.3
558,372 + Atu0573 0.31 +2.8
558,377 + Atu0573 0.32 +2.1
558,430 + Atu0573 0.40 +1.9
558,438 - Atu0573 0.41 +1.9
558,452 + Atu0573 0.43 +2.3
558,476 + Atu0573 0.47 +3.0
558,500 + Atu0573 0.50 +2.1
558,558 - Atu0573 0.59 +3.0
558,576 + Atu0573 0.62 +2.3
558,596 + Atu0573 0.65 +2.2
558,604 - Atu0573 0.66 +2.2
558,604 - Atu0573 0.66 +4.4
558,638 - Atu0573 0.71 +1.6
558,777 + +2.0
558,875 - +0.6
558,879 + +1.5
558,890 + -0.7
559,098 + Atu0574 0.13 -1.0
559,150 + Atu0574 0.17 -0.7
559,159 + Atu0574 0.17 -3.1
559,167 - Atu0574 0.18 -0.4
559,172 - Atu0574 0.18 -1.1
559,185 + Atu0574 0.19 -0.2
559,203 - Atu0574 0.21 -1.1
559,214 + Atu0574 0.22 -1.7
559,227 - Atu0574 0.23 -0.4
559,241 - Atu0574 0.24 -1.6
559,241 - Atu0574 0.24 -2.4
559,278 + Atu0574 0.27 -0.9
559,278 + Atu0574 0.27 -1.0
559,326 + Atu0574 0.30 -1.0
559,357 - Atu0574 0.33 -2.6
559,410 + Atu0574 0.37 -1.8
559,413 + Atu0574 0.37 -1.8
559,418 - Atu0574 0.38 -0.5
559,494 - Atu0574 0.44 -2.0
559,534 - Atu0574 0.47 -1.8
559,564 + Atu0574 0.49 -1.8
559,653 + Atu0574 0.56 -3.2
559,675 + Atu0574 0.58 -2.0
559,714 + Atu0574 0.61 -3.0
559,714 + Atu0574 0.61 -3.4
559,714 + Atu0574 0.61 -2.8
559,756 + Atu0574 0.64 -1.3
559,756 + Atu0574 0.64 -3.6
559,756 + Atu0574 0.64 -2.7
559,764 - Atu0574 0.65 -3.0
559,790 - Atu0574 0.67 -0.8
559,798 + Atu0574 0.67 -3.7
559,800 - Atu0574 0.67 -0.5
559,840 + Atu0574 0.71 -2.6
559,862 - Atu0574 0.72 -1.5
559,864 + Atu0574 0.72 -1.6
559,872 - Atu0574 0.73 -1.9
559,958 + Atu0574 0.80 -2.5
560,055 + Atu0574 0.87 -1.9
560,055 + Atu0574 0.87 -2.9
560,055 + Atu0574 0.87 -2.9
560,080 + Atu0574 0.89 -0.6
560,218 - -1.6
560,241 - -1.2
560,248 + -1.4
560,256 - -0.7
560,263 - -1.6
560,287 + -1.6
560,289 + -0.9
560,289 + -1.1
560,295 - -0.4
560,412 - Atu0575 0.12 -2.3
560,414 + Atu0575 0.12 -2.7
560,422 - Atu0575 0.12 -0.2
560,430 - Atu0575 0.13 +0.9
560,449 - Atu0575 0.14 -0.9
560,470 + Atu0575 0.16 -1.1
560,478 - Atu0575 0.16 -0.3
560,478 - Atu0575 0.16 -1.4
560,478 - Atu0575 0.16 +0.3
560,485 + Atu0575 0.17 -1.4
560,488 - Atu0575 0.17 -1.3
560,493 - Atu0575 0.17 -1.1
560,558 + Atu0575 0.22 -1.1
560,581 + Atu0575 0.23 -3.3
560,581 + Atu0575 0.23 -1.3
560,663 + Atu0575 0.29 -0.8
560,675 + Atu0575 0.30 -1.1
560,677 + Atu0575 0.30 -2.4
560,731 - Atu0575 0.33 +1.8
560,752 - Atu0575 0.35 -1.4
560,801 - Atu0575 0.38 +0.2
560,894 + Atu0575 0.44 -1.5
560,916 - Atu0575 0.46 -2.3
560,918 + Atu0575 0.46 -1.0
560,918 + Atu0575 0.46 -1.3
560,918 + Atu0575 0.46 +0.0
560,918 + Atu0575 0.46 -0.6
560,926 - Atu0575 0.47 -1.2
560,926 - Atu0575 0.47 +0.9
560,984 - Atu0575 0.50 -0.9
561,104 - Atu0575 0.59 -0.7
561,126 + Atu0575 0.60 -0.7
561,129 + Atu0575 0.60 -0.2
561,192 - Atu0575 0.65 -1.4

Or see this region's nucleotide sequence