Strain Fitness in Agrobacterium fabrum C58 around Atu0500

Experiment: R2A with Vancomycin 0.009 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0499 and Atu0500 overlap by 71 nucleotidesAtu0500 and Atu0501 are separated by 165 nucleotides Atu0499: Atu0499 - hypothetical protein, at 485,874 to 489,620 Atu0499 Atu0500: Atu0500 - hypothetical protein, at 489,550 to 489,831 Atu0500 Atu0501: Atu0501 - acyl-CoA dehydrogenase, at 489,997 to 491,793 Atu0501 Position (kb) 489 490Strain fitness (log2 ratio) -1 0 1 2 3 4at 488.927 kb on - strand, within Atu0499at 489.200 kb on - strand, within Atu0499at 489.228 kb on + strand, within Atu0499at 489.451 kb on - strandat 489.606 kb on - strandat 489.986 kb on - strandat 490.026 kb on - strandat 490.090 kb on - strandat 490.107 kb on + strandat 490.168 kb on - strandat 490.188 kb on - strand, within Atu0501at 490.190 kb on - strand, within Atu0501at 490.238 kb on - strand, within Atu0501at 490.274 kb on + strand, within Atu0501at 490.382 kb on + strand, within Atu0501at 490.473 kb on + strand, within Atu0501at 490.481 kb on + strand, within Atu0501at 490.489 kb on - strand, within Atu0501at 490.532 kb on - strand, within Atu0501at 490.538 kb on - strand, within Atu0501at 490.652 kb on - strand, within Atu0501at 490.739 kb on + strand, within Atu0501at 490.818 kb on + strand, within Atu0501at 490.826 kb on - strand, within Atu0501

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM
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488,927 - Atu0499 0.81 +1.7
489,200 - Atu0499 0.89 +1.2
489,228 + Atu0499 0.90 +1.3
489,451 - +0.5
489,606 - +2.2
489,986 - +1.4
490,026 - +3.6
490,090 - +3.3
490,107 + +3.5
490,168 - +3.2
490,188 - Atu0501 0.11 +2.9
490,190 - Atu0501 0.11 +2.5
490,238 - Atu0501 0.13 +3.0
490,274 + Atu0501 0.15 +3.5
490,382 + Atu0501 0.21 +3.5
490,473 + Atu0501 0.26 +3.4
490,481 + Atu0501 0.27 +4.0
490,489 - Atu0501 0.27 +3.2
490,532 - Atu0501 0.30 +3.5
490,538 - Atu0501 0.30 +3.3
490,652 - Atu0501 0.36 +3.5
490,739 + Atu0501 0.41 +3.6
490,818 + Atu0501 0.46 +3.5
490,826 - Atu0501 0.46 +3.3

Or see this region's nucleotide sequence