Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0494 and Atu0495 are separated by 34 nucleotides Atu0495 and Atu0496 are separated by 22 nucleotides Atu0496 and Atu8130 are separated by 157 nucleotides Atu8130 and Atu0498 are separated by 32 nucleotides
Atu0494: Atu0494 - large atp-dependant helicase-related protein, at 480,100 to 482,478
Atu0494
Atu0495: Atu0495 - hypothetical protein, at 482,513 to 483,241
Atu0495
Atu0496: Atu0496 - hypothetical protein, at 483,264 to 483,701
Atu0496
Atu8130: Atu8130 - hypothetical protein, at 483,859 to 484,650
Atu8130
Atu0498: Atu0498 - hypothetical protein, at 484,683 to 485,609
Atu0498
Position (kb) 483
484 Strain fitness (log2 ratio) -2
-1
0
1 at 482.431 kb on + strand at 482.521 kb on - strand at 482.627 kb on - strand, within Atu0495 at 482.668 kb on + strand, within Atu0495 at 482.697 kb on + strand, within Atu0495 at 482.839 kb on + strand, within Atu0495 at 482.931 kb on + strand, within Atu0495 at 483.126 kb on + strand, within Atu0495 at 483.134 kb on - strand, within Atu0495 at 483.198 kb on - strand at 483.213 kb on - strand at 483.316 kb on - strand, within Atu0496 at 483.364 kb on - strand, within Atu0496 at 483.385 kb on - strand, within Atu0496 at 483.636 kb on + strand, within Atu0496 at 483.723 kb on + strand at 483.769 kb on - strand at 483.964 kb on + strand, within Atu8130 at 483.996 kb on + strand, within Atu8130 at 484.004 kb on - strand, within Atu8130 at 484.030 kb on + strand, within Atu8130 at 484.094 kb on + strand, within Atu8130 at 484.094 kb on + strand, within Atu8130 at 484.102 kb on - strand, within Atu8130 at 484.102 kb on - strand, within Atu8130 at 484.172 kb on + strand, within Atu8130 at 484.247 kb on + strand, within Atu8130 at 484.254 kb on + strand, within Atu8130 at 484.262 kb on - strand, within Atu8130 at 484.324 kb on - strand, within Atu8130 at 484.350 kb on - strand, within Atu8130 at 484.441 kb on - strand, within Atu8130 at 484.469 kb on + strand, within Atu8130 at 484.477 kb on - strand, within Atu8130 at 484.586 kb on - strand at 484.643 kb on - strand at 484.697 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 482,431 + -0.3 482,521 - +0.7 482,627 - Atu0495 0.16 -0.5 482,668 + Atu0495 0.21 -0.4 482,697 + Atu0495 0.25 -0.1 482,839 + Atu0495 0.45 -0.1 482,931 + Atu0495 0.57 -0.2 483,126 + Atu0495 0.84 +0.6 483,134 - Atu0495 0.85 -0.2 483,198 - -0.6 483,213 - -0.5 483,316 - Atu0496 0.12 +0.0 483,364 - Atu0496 0.23 +0.2 483,385 - Atu0496 0.28 -0.1 483,636 + Atu0496 0.85 +0.8 483,723 + +1.1 483,769 - +0.0 483,964 + Atu8130 0.13 -2.1 483,996 + Atu8130 0.17 -1.0 484,004 - Atu8130 0.18 -1.1 484,030 + Atu8130 0.22 -1.6 484,094 + Atu8130 0.30 -0.8 484,094 + Atu8130 0.30 +0.9 484,102 - Atu8130 0.31 -2.1 484,102 - Atu8130 0.31 -0.7 484,172 + Atu8130 0.40 -0.1 484,247 + Atu8130 0.49 -1.8 484,254 + Atu8130 0.50 -0.3 484,262 - Atu8130 0.51 -2.0 484,324 - Atu8130 0.59 +0.3 484,350 - Atu8130 0.62 -1.4 484,441 - Atu8130 0.73 -1.1 484,469 + Atu8130 0.77 -1.2 484,477 - Atu8130 0.78 -2.3 484,586 - -0.6 484,643 - +0.5 484,697 + -0.9
Or see this region's nucleotide sequence