Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0357 and Atu0358 are separated by 10 nucleotides Atu0358 and Atu0359 are separated by 15 nucleotides
Atu0357: Atu0357 - phosphate starvation inducible protein, at 351,087 to 352,142
Atu0357
Atu0358: Atu0358 - hypothetical protein, at 352,153 to 352,659
Atu0358
Atu0359: Atu0359 - hemolysin, at 352,675 to 353,817
Atu0359
Position (kb) 352
353 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 351.263 kb on + strand, within Atu0357 at 351.339 kb on - strand, within Atu0357 at 351.344 kb on + strand, within Atu0357 at 351.352 kb on - strand, within Atu0357 at 351.513 kb on + strand, within Atu0357 at 351.573 kb on + strand, within Atu0357 at 351.573 kb on + strand, within Atu0357 at 351.743 kb on + strand, within Atu0357 at 351.834 kb on - strand, within Atu0357 at 351.864 kb on + strand, within Atu0357 at 351.887 kb on + strand, within Atu0357 at 352.045 kb on - strand at 352.116 kb on + strand at 352.642 kb on + strand at 352.650 kb on - strand at 352.741 kb on - strand at 352.743 kb on + strand at 352.751 kb on - strand at 352.849 kb on + strand, within Atu0359 at 352.864 kb on + strand, within Atu0359 at 352.977 kb on - strand, within Atu0359 at 352.988 kb on + strand, within Atu0359 at 353.025 kb on - strand, within Atu0359 at 353.025 kb on - strand, within Atu0359 at 353.084 kb on - strand, within Atu0359 at 353.189 kb on - strand, within Atu0359 at 353.242 kb on - strand, within Atu0359 at 353.291 kb on + strand, within Atu0359 at 353.291 kb on + strand, within Atu0359 at 353.298 kb on - strand, within Atu0359 at 353.313 kb on + strand, within Atu0359 at 353.313 kb on + strand, within Atu0359 at 353.321 kb on - strand, within Atu0359 at 353.372 kb on + strand, within Atu0359 at 353.445 kb on + strand, within Atu0359 at 353.601 kb on + strand, within Atu0359 at 353.627 kb on - strand, within Atu0359 at 353.636 kb on - strand, within Atu0359
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 351,263 + Atu0357 0.17 +3.0 351,339 - Atu0357 0.24 +2.9 351,344 + Atu0357 0.24 +1.8 351,352 - Atu0357 0.25 +2.6 351,513 + Atu0357 0.40 +1.8 351,573 + Atu0357 0.46 +3.4 351,573 + Atu0357 0.46 +3.1 351,743 + Atu0357 0.62 +1.6 351,834 - Atu0357 0.71 +3.3 351,864 + Atu0357 0.74 +2.9 351,887 + Atu0357 0.76 +1.3 352,045 - +4.3 352,116 + +0.9 352,642 + +2.5 352,650 - +2.4 352,741 - +1.7 352,743 + +0.9 352,751 - +1.5 352,849 + Atu0359 0.15 +2.4 352,864 + Atu0359 0.17 +1.8 352,977 - Atu0359 0.26 +1.9 352,988 + Atu0359 0.27 +2.0 353,025 - Atu0359 0.31 +2.4 353,025 - Atu0359 0.31 +2.1 353,084 - Atu0359 0.36 +1.9 353,189 - Atu0359 0.45 +1.6 353,242 - Atu0359 0.50 +0.3 353,291 + Atu0359 0.54 +1.4 353,291 + Atu0359 0.54 +2.4 353,298 - Atu0359 0.55 +2.0 353,313 + Atu0359 0.56 +2.9 353,313 + Atu0359 0.56 +2.3 353,321 - Atu0359 0.57 +2.1 353,372 + Atu0359 0.61 +1.8 353,445 + Atu0359 0.67 +0.7 353,601 + Atu0359 0.81 +1.4 353,627 - Atu0359 0.83 +1.9 353,636 - Atu0359 0.84 +2.3
Or see this region's nucleotide sequence