Experiment: R2A with Vancomycin 0.009 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0292 and Atu0293 are separated by 300 nucleotides Atu0293 and Atu0294 are separated by 159 nucleotides
Atu0292: Atu0292 - iron-sulfur cluster binding protein, at 286,657 to 287,637
Atu0292
Atu0293: Atu0293 - glutathione S-transferase, at 287,938 to 288,630
Atu0293
Atu0294: Atu0294 - undecaprenyl pyrophosphate phosphatase, possible bacitracin resistance protein, at 288,790 to 289,596
Atu0294
Position (kb) 287
288
289 Strain fitness (log2 ratio) -2
-1
0
1 at 286.941 kb on + strand, within Atu0292 at 286.983 kb on - strand, within Atu0292 at 287.141 kb on - strand, within Atu0292 at 287.146 kb on - strand, within Atu0292 at 287.204 kb on + strand, within Atu0292 at 287.246 kb on - strand, within Atu0292 at 287.251 kb on - strand, within Atu0292 at 287.281 kb on + strand, within Atu0292 at 287.518 kb on - strand, within Atu0292 at 287.590 kb on - strand at 287.632 kb on + strand at 287.644 kb on + strand at 287.721 kb on + strand at 287.729 kb on - strand at 287.729 kb on - strand at 287.834 kb on + strand at 287.842 kb on - strand at 288.786 kb on + strand at 288.794 kb on - strand at 288.924 kb on - strand, within Atu0294 at 289.016 kb on + strand, within Atu0294 at 289.016 kb on + strand, within Atu0294 at 289.016 kb on + strand, within Atu0294 at 289.024 kb on - strand, within Atu0294 at 289.024 kb on - strand, within Atu0294 at 289.031 kb on + strand, within Atu0294 at 289.039 kb on - strand, within Atu0294 at 289.087 kb on + strand, within Atu0294 at 289.108 kb on + strand, within Atu0294 at 289.149 kb on - strand, within Atu0294 at 289.255 kb on - strand, within Atu0294 at 289.314 kb on + strand, within Atu0294 at 289.320 kb on - strand, within Atu0294 at 289.455 kb on - strand, within Atu0294 at 289.585 kb on - strand at 289.603 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.009 mM remove 286,941 + Atu0292 0.29 -0.2 286,983 - Atu0292 0.33 +0.3 287,141 - Atu0292 0.49 -0.2 287,146 - Atu0292 0.50 +1.5 287,204 + Atu0292 0.56 -0.9 287,246 - Atu0292 0.60 -0.5 287,251 - Atu0292 0.61 +0.6 287,281 + Atu0292 0.64 -0.7 287,518 - Atu0292 0.88 -1.2 287,590 - -1.9 287,632 + -0.1 287,644 + -0.2 287,721 + -0.8 287,729 - -1.4 287,729 - -0.4 287,834 + -0.2 287,842 - +0.6 288,786 + +0.2 288,794 - +1.1 288,924 - Atu0294 0.17 +0.5 289,016 + Atu0294 0.28 +0.1 289,016 + Atu0294 0.28 +0.3 289,016 + Atu0294 0.28 -0.7 289,024 - Atu0294 0.29 +0.4 289,024 - Atu0294 0.29 -0.0 289,031 + Atu0294 0.30 -0.9 289,039 - Atu0294 0.31 +1.7 289,087 + Atu0294 0.37 +0.5 289,108 + Atu0294 0.39 -0.1 289,149 - Atu0294 0.44 -0.6 289,255 - Atu0294 0.58 -0.2 289,314 + Atu0294 0.65 -0.7 289,320 - Atu0294 0.66 +0.3 289,455 - Atu0294 0.82 +0.3 289,585 - -0.7 289,603 + +0.2
Or see this region's nucleotide sequence