Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS07425

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
1,965,533	+		RPSI07_RS24790	0.87	-1.4
1,965,534	-		RPSI07_RS24790	0.88	-0.4
1,965,751	+				-0.2
1,965,751	+				+0.5
1,965,752	-				+0.1
1,965,752	-				-0.3
1,965,752	-				+1.7
1,965,786	+				-1.5
1,965,786	+				+0.9
1,965,786	+				-1.1
1,965,787	-				-0.6
1,965,787	-				-0.2
1,965,787	-				+1.5
1,965,819	-				+1.0
1,965,828	+				+0.7
1,965,829	-				+0.5
1,965,829	-				-0.1
1,965,829	-				+0.9
1,965,873	+		RPSI07_RS07420	0.12	+0.0
1,965,933	+		RPSI07_RS07420	0.22	-1.7
1,965,933	+		RPSI07_RS07420	0.22	-0.3
1,965,934	-		RPSI07_RS07420	0.22	+0.6
1,965,934	-		RPSI07_RS07420	0.22	+0.3
1,966,001	+		RPSI07_RS07420	0.33	+1.3
1,966,001	+		RPSI07_RS07420	0.33	+0.0
1,966,002	-		RPSI07_RS07420	0.33	-0.3
1,966,002	-		RPSI07_RS07420	0.33	+0.3
1,966,035	+		RPSI07_RS07420	0.38	-0.0
1,966,035	+		RPSI07_RS07420	0.38	+0.4
1,966,056	+		RPSI07_RS07420	0.42	-2.2
1,966,056	+		RPSI07_RS07420	0.42	+0.1
1,966,056	+		RPSI07_RS07420	0.42	+0.1
1,966,056	+		RPSI07_RS07420	0.42	+0.3
1,966,057	-		RPSI07_RS07420	0.42	-0.9
1,966,257	+		RPSI07_RS07420	0.74	+0.5
1,966,258	-		RPSI07_RS07420	0.74	-0.7
1,966,258	-		RPSI07_RS07420	0.74	-0.4
1,966,372	+				+1.1
1,966,372	+				+0.2
1,966,372	+				-0.6
1,966,372	+				+0.5
1,966,372	+				+1.5
1,966,372	+				-0.4
1,966,372	+				+1.0
1,966,373	-				+0.1
1,966,416	+				+0.6
1,966,416	+				-0.4
1,966,416	+				-0.0
1,966,417	-				-0.7
1,966,417	-				+0.2
1,966,417	-				-1.4
1,966,417	-				-0.2
1,966,417	-				-0.2
1,966,417	-				-0.4
1,966,420	+				+0.7
1,966,420	+				+1.5
1,966,421	-				-0.6
1,966,525	+				+1.7
1,966,525	+				-1.2
1,966,526	-				+0.7
1,966,526	-				-0.4
1,966,665	+		RPSI07_RS07425	0.11	+0.4
1,966,665	+		RPSI07_RS07425	0.11	-0.1
1,966,666	-		RPSI07_RS07425	0.11	+0.9
1,966,666	-		RPSI07_RS07425	0.11	+1.5
1,966,666	-		RPSI07_RS07425	0.11	-0.4
1,966,666	-		RPSI07_RS07425	0.11	+0.2
1,966,666	-		RPSI07_RS07425	0.11	+0.5
1,966,666	-		RPSI07_RS07425	0.11	-0.8
1,966,666	-		RPSI07_RS07425	0.11	+3.0
1,966,666	-		RPSI07_RS07425	0.11	-0.1
1,966,666	-		RPSI07_RS07425	0.11	+2.3
1,966,758	+		RPSI07_RS07425	0.19	-0.3
1,966,758	+		RPSI07_RS07425	0.19	-0.9
1,966,759	-		RPSI07_RS07425	0.19	-1.6
1,966,801	-		RPSI07_RS07425	0.22	-0.7
1,966,858	-		RPSI07_RS07425	0.27	-0.2
1,966,861	-		RPSI07_RS07425	0.27	-0.3
1,966,861	-		RPSI07_RS07425	0.27	-0.1
1,966,895	-		RPSI07_RS07425	0.30	-1.0
1,966,895	-		RPSI07_RS07425	0.30	-0.3
1,967,065	-		RPSI07_RS07425	0.43	+0.8
1,967,154	+		RPSI07_RS07425	0.51	-0.4
1,967,154	+		RPSI07_RS07425	0.51	+0.4
1,967,155	-		RPSI07_RS07425	0.51	-1.0
1,967,155	-		RPSI07_RS07425	0.51	+0.7
1,967,155	-		RPSI07_RS07425	0.51	+0.7
1,967,241	+		RPSI07_RS07425	0.58	+1.0
1,967,241	+		RPSI07_RS07425	0.58	+0.5
1,967,241	+		RPSI07_RS07425	0.58	+1.7
1,967,242	-		RPSI07_RS07425	0.58	-1.3
1,967,610	+		RPSI07_RS07425	0.87	-0.6
1,967,610	+		RPSI07_RS07425	0.87	-0.5
1,967,610	+		RPSI07_RS07425	0.87	-1.6
1,967,610	+		RPSI07_RS07425	0.87	+0.0
1,967,610	+		RPSI07_RS07425	0.87	+3.7
1,967,611	-		RPSI07_RS07425	0.88	+1.0
1,967,611	-		RPSI07_RS07425	0.88	-2.0
1,967,611	-		RPSI07_RS07425	0.88	+1.7
1,967,665	-				-0.1
1,967,665	-				-0.9
1,967,665	-				-0.1
1,967,670	+				+1.7
1,967,670	+				+0.0
1,967,670	+				+0.5
1,967,670	+				-0.4
1,967,670	+				-0.2
1,967,671	-				-1.4
1,967,671	-				-0.5
1,967,671	-				+1.3
1,967,671	-				-0.6
1,967,671	-				+0.3
1,967,671	-				+0.7
1,967,671	-				+0.4
1,967,671	-				-0.4
1,967,671	-				-0.6
1,967,671	-				-0.1
1,967,671	-				-0.1
1,967,706	+				+0.5
1,967,706	+				-0.3
1,967,707	-				-1.2
1,967,707	-				+0.4
1,967,707	-				-0.7
1,967,951	+				+1.9
1,967,951	+				-0.8
1,967,951	+				+0.9
1,967,952	-				-1.0
1,967,952	-				+0.0
1,967,963	+				+1.0
1,967,964	-				-1.0
1,967,964	-				+0.3
1,967,964	-				+0.4
1,968,055	+				+0.3
1,968,055	+				+0.9
1,968,055	+				-1.0
1,968,055	+				+0.1
1,968,056	-				-1.1
1,968,056	-				-2.6
1,968,056	-				+0.3
1,968,056	-				+0.5
1,968,056	-				-0.1
1,968,056	-				-0.5
1,968,221	-		RPSI07_RS07430	0.14	+1.6
1,968,221	-		RPSI07_RS07430	0.14	+0.6
1,968,272	+		RPSI07_RS07430	0.18	+0.7
1,968,272	+		RPSI07_RS07430	0.18	+0.2
1,968,272	+		RPSI07_RS07430	0.18	-0.5
1,968,272	+				+0.7
1,968,273	-		RPSI07_RS07430	0.18	+0.2
1,968,273	-		RPSI07_RS07430	0.18	+0.7
1,968,273	-		RPSI07_RS07430	0.18	+0.4
1,968,273	-		RPSI07_RS07430	0.18	+0.1
1,968,273	-		RPSI07_RS07430	0.18	+1.0
1,968,273	-		RPSI07_RS07430	0.18	-0.2
1,968,283	+		RPSI07_RS07430	0.19	-0.8
1,968,283	+		RPSI07_RS07430	0.19	+0.3
1,968,284	-		RPSI07_RS07430	0.19	-1.9
1,968,284	-		RPSI07_RS07430	0.19	+0.1
1,968,284	-		RPSI07_RS07430	0.19	-0.6
1,968,284	-		RPSI07_RS07430	0.19	+0.6
1,968,284	-		RPSI07_RS07430	0.19	+0.8
1,968,287	-		RPSI07_RS07430	0.19	+0.3
1,968,427	+		RPSI07_RS07430	0.31	-0.9
1,968,427	+		RPSI07_RS07430	0.31	+2.3
1,968,427	+		RPSI07_RS07430	0.31	-0.1
1,968,427	+		RPSI07_RS07430	0.31	-2.2
1,968,427	+		RPSI07_RS07430	0.31	+0.2
1,968,427	+		RPSI07_RS07430	0.31	+0.4
1,968,427	+		RPSI07_RS07430	0.31	+0.2
1,968,428	-		RPSI07_RS07430	0.31	-0.1
1,968,428	-		RPSI07_RS07430	0.31	-0.7
1,968,428	-		RPSI07_RS07430	0.31	+0.6
1,968,706	+		RPSI07_RS07430	0.54	-0.9
1,968,706	+		RPSI07_RS07430	0.54	-0.4
1,968,706	+		RPSI07_RS07430	0.54	+1.9
1,968,706	+		RPSI07_RS07430	0.54	-1.3
1,968,707	-		RPSI07_RS07430	0.55	+0.1
1,968,757	+		RPSI07_RS07430	0.59	-0.8
1,968,757	+		RPSI07_RS07430	0.59	+0.1
1,968,758	-		RPSI07_RS07430	0.59	+0.1