Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS02815 and RPSI07_RS02820 are separated by 175 nucleotides RPSI07_RS02820 and RPSI07_RS02825 are separated by 89 nucleotides RPSI07_RS02825 and RPSI07_RS02830 are separated by 17 nucleotides
RPSI07_RS02815: RPSI07_RS02815 - pyridoxal phosphate-dependent aminotransferase, at 783,836 to 785,044
_RS02815
RPSI07_RS02820: RPSI07_RS02820 - LysR family transcriptional regulator, at 785,220 to 786,161
_RS02820
RPSI07_RS02825: RPSI07_RS02825 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 786,251 to 786,709
_RS02825
RPSI07_RS02830: RPSI07_RS02830 - acetyl-CoA carboxylase biotin carboxylase subunit, at 786,727 to 788,094
_RS02830
Position (kb) 785
786
787 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 784.317 kb on + strand, within RPSI07_RS02815 at 784.317 kb on + strand, within RPSI07_RS02815 at 784.318 kb on - strand, within RPSI07_RS02815 at 784.318 kb on - strand, within RPSI07_RS02815 at 784.318 kb on - strand, within RPSI07_RS02815 at 784.375 kb on + strand, within RPSI07_RS02815 at 784.375 kb on + strand, within RPSI07_RS02815 at 784.376 kb on - strand, within RPSI07_RS02815 at 784.419 kb on + strand, within RPSI07_RS02815 at 784.419 kb on + strand, within RPSI07_RS02815 at 784.420 kb on - strand, within RPSI07_RS02815 at 784.420 kb on - strand, within RPSI07_RS02815 at 784.424 kb on - strand, within RPSI07_RS02815 at 784.424 kb on - strand, within RPSI07_RS02815 at 784.495 kb on + strand, within RPSI07_RS02815 at 784.495 kb on + strand, within RPSI07_RS02815 at 784.496 kb on - strand, within RPSI07_RS02815 at 784.496 kb on - strand, within RPSI07_RS02815 at 784.497 kb on + strand, within RPSI07_RS02815 at 784.497 kb on + strand, within RPSI07_RS02815 at 784.497 kb on + strand, within RPSI07_RS02815 at 784.497 kb on + strand, within RPSI07_RS02815 at 784.498 kb on - strand, within RPSI07_RS02815 at 784.534 kb on + strand, within RPSI07_RS02815 at 784.534 kb on + strand, within RPSI07_RS02815 at 784.534 kb on + strand, within RPSI07_RS02815 at 784.535 kb on - strand, within RPSI07_RS02815 at 784.535 kb on - strand, within RPSI07_RS02815 at 784.535 kb on - strand, within RPSI07_RS02815 at 784.535 kb on - strand, within RPSI07_RS02815 at 784.535 kb on - strand, within RPSI07_RS02815 at 784.546 kb on + strand, within RPSI07_RS02815 at 784.547 kb on - strand, within RPSI07_RS02815 at 784.547 kb on - strand, within RPSI07_RS02815 at 784.547 kb on - strand, within RPSI07_RS02815 at 784.669 kb on - strand, within RPSI07_RS02815 at 784.669 kb on - strand, within RPSI07_RS02815 at 784.685 kb on + strand, within RPSI07_RS02815 at 784.685 kb on + strand, within RPSI07_RS02815 at 784.685 kb on + strand, within RPSI07_RS02815 at 784.686 kb on - strand, within RPSI07_RS02815 at 784.686 kb on - strand, within RPSI07_RS02815 at 784.686 kb on - strand, within RPSI07_RS02815 at 784.725 kb on + strand, within RPSI07_RS02815 at 784.725 kb on + strand, within RPSI07_RS02815 at 784.726 kb on - strand, within RPSI07_RS02815 at 784.726 kb on - strand, within RPSI07_RS02815 at 784.774 kb on - strand, within RPSI07_RS02815 at 785.072 kb on + strand at 785.072 kb on + strand at 785.072 kb on + strand at 785.073 kb on - strand at 785.073 kb on - strand at 785.084 kb on + strand at 785.121 kb on + strand at 785.121 kb on + strand at 785.121 kb on + strand at 785.121 kb on + strand at 785.122 kb on - strand at 785.122 kb on - strand at 785.122 kb on - strand at 785.127 kb on + strand at 785.127 kb on + strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.131 kb on + strand at 785.142 kb on + strand at 785.142 kb on + strand at 785.142 kb on + strand at 785.142 kb on + strand at 785.142 kb on + strand at 785.142 kb on + strand at 785.142 kb on + strand at 785.142 kb on + strand at 785.142 kb on + strand at 785.142 kb on + strand at 785.142 kb on + strand at 785.142 kb on + strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.143 kb on - strand at 785.144 kb on + strand at 785.144 kb on + strand at 785.144 kb on + strand at 785.144 kb on + strand at 785.144 kb on + strand at 785.144 kb on + strand at 785.145 kb on - strand at 785.167 kb on + strand at 785.177 kb on + strand at 785.177 kb on + strand at 785.177 kb on + strand at 785.177 kb on + strand at 785.177 kb on + strand at 785.178 kb on - strand at 785.178 kb on - strand at 785.178 kb on - strand at 785.209 kb on + strand at 785.209 kb on + strand at 785.210 kb on - strand at 785.241 kb on + strand at 785.241 kb on + strand at 785.241 kb on + strand at 785.242 kb on - strand at 785.249 kb on - strand at 785.249 kb on - strand at 785.413 kb on - strand, within RPSI07_RS02820 at 785.589 kb on + strand, within RPSI07_RS02820 at 785.589 kb on + strand, within RPSI07_RS02820 at 785.590 kb on - strand, within RPSI07_RS02820 at 785.590 kb on - strand, within RPSI07_RS02820 at 785.604 kb on + strand, within RPSI07_RS02820 at 785.605 kb on - strand, within RPSI07_RS02820 at 785.605 kb on - strand, within RPSI07_RS02820 at 785.605 kb on - strand, within RPSI07_RS02820 at 785.661 kb on + strand, within RPSI07_RS02820 at 785.661 kb on + strand, within RPSI07_RS02820 at 785.661 kb on + strand, within RPSI07_RS02820 at 785.662 kb on - strand, within RPSI07_RS02820 at 785.721 kb on + strand, within RPSI07_RS02820 at 785.721 kb on + strand, within RPSI07_RS02820 at 785.721 kb on + strand, within RPSI07_RS02820 at 785.721 kb on + strand, within RPSI07_RS02820 at 785.721 kb on + strand, within RPSI07_RS02820 at 785.722 kb on - strand, within RPSI07_RS02820 at 785.722 kb on - strand, within RPSI07_RS02820 at 785.722 kb on - strand, within RPSI07_RS02820 at 785.722 kb on - strand, within RPSI07_RS02820 at 785.722 kb on - strand, within RPSI07_RS02820 at 785.722 kb on - strand, within RPSI07_RS02820 at 785.765 kb on - strand, within RPSI07_RS02820 at 785.765 kb on - strand, within RPSI07_RS02820 at 785.796 kb on + strand, within RPSI07_RS02820 at 785.797 kb on - strand, within RPSI07_RS02820 at 785.797 kb on - strand, within RPSI07_RS02820 at 785.810 kb on + strand, within RPSI07_RS02820 at 785.812 kb on - strand, within RPSI07_RS02820 at 786.159 kb on + strand at 786.215 kb on + strand at 786.217 kb on + strand at 786.218 kb on - strand at 786.230 kb on - strand at 786.489 kb on + strand, within RPSI07_RS02825 at 786.489 kb on + strand, within RPSI07_RS02825 at 786.564 kb on + strand, within RPSI07_RS02825 at 786.820 kb on + strand at 786.824 kb on - strand at 786.847 kb on + strand at 786.847 kb on + strand at 786.847 kb on + strand at 786.904 kb on + strand, within RPSI07_RS02830 at 787.042 kb on - strand, within RPSI07_RS02830
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days remove 784,317 + RPSI07_RS02815 0.40 +1.1 784,317 + RPSI07_RS02815 0.40 -0.6 784,318 - RPSI07_RS02815 0.40 +0.9 784,318 - RPSI07_RS02815 0.40 -1.7 784,318 - RPSI07_RS02815 0.40 +0.5 784,375 + RPSI07_RS02815 0.45 -1.8 784,375 + RPSI07_RS02815 0.45 -0.0 784,376 - RPSI07_RS02815 0.45 +2.1 784,419 + RPSI07_RS02815 0.48 +0.9 784,419 + RPSI07_RS02815 0.48 +2.2 784,420 - RPSI07_RS02815 0.48 +0.3 784,420 - RPSI07_RS02815 0.48 +2.1 784,424 - RPSI07_RS02815 0.49 -1.3 784,424 - RPSI07_RS02815 0.49 +0.7 784,495 + RPSI07_RS02815 0.55 -1.3 784,495 + RPSI07_RS02815 0.55 -1.3 784,496 - RPSI07_RS02815 0.55 +3.0 784,496 - RPSI07_RS02815 0.55 -1.1 784,497 + RPSI07_RS02815 0.55 -0.0 784,497 + RPSI07_RS02815 0.55 -1.7 784,497 + RPSI07_RS02815 0.55 +4.2 784,497 + RPSI07_RS02815 0.55 -2.4 784,498 - RPSI07_RS02815 0.55 +0.4 784,534 + RPSI07_RS02815 0.58 -0.8 784,534 + RPSI07_RS02815 0.58 +0.7 784,534 + RPSI07_RS02815 0.58 -0.3 784,535 - RPSI07_RS02815 0.58 -0.4 784,535 - RPSI07_RS02815 0.58 +1.3 784,535 - RPSI07_RS02815 0.58 -1.4 784,535 - RPSI07_RS02815 0.58 -1.2 784,535 - RPSI07_RS02815 0.58 -0.2 784,546 + RPSI07_RS02815 0.59 -1.0 784,547 - RPSI07_RS02815 0.59 -0.9 784,547 - RPSI07_RS02815 0.59 -1.0 784,547 - RPSI07_RS02815 0.59 -1.3 784,669 - RPSI07_RS02815 0.69 -0.4 784,669 - RPSI07_RS02815 0.69 +0.1 784,685 + RPSI07_RS02815 0.70 -0.4 784,685 + RPSI07_RS02815 0.70 -1.7 784,685 + RPSI07_RS02815 0.70 +1.7 784,686 - RPSI07_RS02815 0.70 -0.3 784,686 - RPSI07_RS02815 0.70 -1.0 784,686 - RPSI07_RS02815 0.70 -0.6 784,725 + RPSI07_RS02815 0.74 -0.1 784,725 + RPSI07_RS02815 0.74 +0.1 784,726 - RPSI07_RS02815 0.74 +1.3 784,726 - RPSI07_RS02815 0.74 -0.6 784,774 - RPSI07_RS02815 0.78 -1.4 785,072 + +0.6 785,072 + +0.5 785,072 + +0.4 785,073 - -0.6 785,073 - -0.5 785,084 + -0.2 785,121 + +0.5 785,121 + -0.9 785,121 + -2.0 785,121 + +1.0 785,122 - -0.7 785,122 - +1.6 785,122 - -0.4 785,127 + -0.6 785,127 + +2.2 785,128 - -0.1 785,128 - -2.3 785,128 - +0.5 785,128 - +1.1 785,128 - -0.3 785,128 - -0.6 785,128 - -0.5 785,128 - +0.6 785,128 - +0.6 785,131 + +0.2 785,142 + +0.8 785,142 + +0.4 785,142 + -0.6 785,142 + +2.2 785,142 + -1.6 785,142 + -1.1 785,142 + -1.1 785,142 + -0.4 785,142 + +0.6 785,142 + +0.4 785,142 + -0.5 785,142 + +1.1 785,143 - -0.1 785,143 - -0.7 785,143 - -0.0 785,143 - +0.3 785,143 - +0.4 785,143 - +0.4 785,143 - -1.6 785,143 - -0.4 785,143 - +0.3 785,143 - -0.4 785,143 - -1.9 785,143 - -0.7 785,143 - -0.0 785,143 - -0.6 785,143 - -0.7 785,144 + -0.0 785,144 + -0.1 785,144 + +0.1 785,144 + -0.3 785,144 + -0.1 785,144 + +0.5 785,145 - +0.2 785,167 + +0.6 785,177 + -1.0 785,177 + -0.1 785,177 + +0.4 785,177 + -0.5 785,177 + -1.1 785,178 - +0.1 785,178 - +1.6 785,178 - +0.8 785,209 + -0.9 785,209 + -0.6 785,210 - -0.8 785,241 + +1.4 785,241 + +1.1 785,241 + +0.6 785,242 - -0.3 785,249 - -0.2 785,249 - +1.2 785,413 - RPSI07_RS02820 0.20 -0.3 785,589 + RPSI07_RS02820 0.39 -0.1 785,589 + RPSI07_RS02820 0.39 -1.8 785,590 - RPSI07_RS02820 0.39 -0.4 785,590 - RPSI07_RS02820 0.39 -1.6 785,604 + RPSI07_RS02820 0.41 -0.9 785,605 - RPSI07_RS02820 0.41 -0.9 785,605 - RPSI07_RS02820 0.41 -0.1 785,605 - RPSI07_RS02820 0.41 -0.5 785,661 + RPSI07_RS02820 0.47 +0.9 785,661 + RPSI07_RS02820 0.47 -1.3 785,661 + RPSI07_RS02820 0.47 -0.4 785,662 - RPSI07_RS02820 0.47 +0.6 785,721 + RPSI07_RS02820 0.53 -2.2 785,721 + RPSI07_RS02820 0.53 -0.8 785,721 + RPSI07_RS02820 0.53 -1.4 785,721 + RPSI07_RS02820 0.53 +1.2 785,721 + RPSI07_RS02820 0.53 -1.0 785,722 - RPSI07_RS02820 0.53 -1.6 785,722 - RPSI07_RS02820 0.53 +1.0 785,722 - RPSI07_RS02820 0.53 -0.6 785,722 - RPSI07_RS02820 0.53 +2.2 785,722 - RPSI07_RS02820 0.53 -0.4 785,722 - RPSI07_RS02820 0.53 -0.6 785,765 - RPSI07_RS02820 0.58 +0.4 785,765 - RPSI07_RS02820 0.58 +1.6 785,796 + RPSI07_RS02820 0.61 +0.4 785,797 - RPSI07_RS02820 0.61 -0.9 785,797 - RPSI07_RS02820 0.61 +0.2 785,810 + RPSI07_RS02820 0.63 -0.2 785,812 - RPSI07_RS02820 0.63 -0.7 786,159 + -0.0 786,215 + +3.0 786,217 + +0.1 786,218 - -0.9 786,230 - -1.2 786,489 + RPSI07_RS02825 0.52 +0.6 786,489 + RPSI07_RS02825 0.52 -0.4 786,564 + RPSI07_RS02825 0.68 +0.1 786,820 + +0.6 786,824 - +1.4 786,847 + +1.4 786,847 + +1.0 786,847 + -0.8 786,904 + RPSI07_RS02830 0.13 -0.3 787,042 - RPSI07_RS02830 0.23 -0.4
Or see this region's nucleotide sequence