Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS02765

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS02760 and RPSI07_RS02765 are separated by 188 nucleotidesRPSI07_RS02765 and RPSI07_RS02770 overlap by 1 nucleotidesRPSI07_RS02770 and RPSI07_RS02775 are separated by 145 nucleotides RPSI07_RS02760: RPSI07_RS02760 - trehalose-6-phosphate synthase, at 773,399 to 775,075 _RS02760 RPSI07_RS02765: RPSI07_RS02765 - porin, at 775,264 to 776,370 _RS02765 RPSI07_RS02770: RPSI07_RS02770 - hypothetical protein, at 776,370 to 776,642 _RS02770 RPSI07_RS02775: RPSI07_RS02775 - NAD synthetase, at 776,788 to 778,212 _RS02775 Position (kb) 775 776 777Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 774.414 kb on - strand, within RPSI07_RS02760at 774.536 kb on + strand, within RPSI07_RS02760at 774.536 kb on + strand, within RPSI07_RS02760at 774.536 kb on + strand, within RPSI07_RS02760at 774.536 kb on + strand, within RPSI07_RS02760at 774.536 kb on + strand, within RPSI07_RS02760at 774.537 kb on - strand, within RPSI07_RS02760at 774.537 kb on - strand, within RPSI07_RS02760at 774.620 kb on + strand, within RPSI07_RS02760at 774.620 kb on + strand, within RPSI07_RS02760at 774.620 kb on + strand, within RPSI07_RS02760at 774.621 kb on - strand, within RPSI07_RS02760at 774.621 kb on - strand, within RPSI07_RS02760at 774.621 kb on - strand, within RPSI07_RS02760at 774.662 kb on + strand, within RPSI07_RS02760at 774.728 kb on + strand, within RPSI07_RS02760at 774.729 kb on - strand, within RPSI07_RS02760at 774.729 kb on - strand, within RPSI07_RS02760at 774.729 kb on - strand, within RPSI07_RS02760at 774.729 kb on - strand, within RPSI07_RS02760at 774.729 kb on - strand, within RPSI07_RS02760at 774.956 kb on + strandat 774.956 kb on + strandat 774.956 kb on + strandat 774.956 kb on + strandat 774.956 kb on + strandat 774.956 kb on + strandat 774.957 kb on - strandat 775.073 kb on + strandat 775.119 kb on + strandat 775.119 kb on + strandat 775.119 kb on + strandat 775.120 kb on - strandat 775.141 kb on + strandat 775.230 kb on + strandat 775.230 kb on + strandat 775.230 kb on + strandat 775.230 kb on + strandat 775.230 kb on + strandat 775.230 kb on + strandat 775.231 kb on - strandat 775.259 kb on + strandat 775.260 kb on - strandat 775.377 kb on + strand, within RPSI07_RS02765at 775.377 kb on + strand, within RPSI07_RS02765at 775.377 kb on + strand, within RPSI07_RS02765at 775.378 kb on - strand, within RPSI07_RS02765at 775.379 kb on + strand, within RPSI07_RS02765at 775.379 kb on + strand, within RPSI07_RS02765at 775.394 kb on + strand, within RPSI07_RS02765at 775.395 kb on - strand, within RPSI07_RS02765at 775.395 kb on - strand, within RPSI07_RS02765at 775.421 kb on + strand, within RPSI07_RS02765at 775.422 kb on - strand, within RPSI07_RS02765at 775.422 kb on - strand, within RPSI07_RS02765at 775.487 kb on + strand, within RPSI07_RS02765at 775.487 kb on + strand, within RPSI07_RS02765at 775.487 kb on + strand, within RPSI07_RS02765at 775.487 kb on + strand, within RPSI07_RS02765at 775.487 kb on + strand, within RPSI07_RS02765at 775.487 kb on + strand, within RPSI07_RS02765at 775.487 kb on + strand, within RPSI07_RS02765at 775.487 kb on + strand, within RPSI07_RS02765at 775.488 kb on - strand, within RPSI07_RS02765at 775.488 kb on - strand, within RPSI07_RS02765at 775.488 kb on - strand, within RPSI07_RS02765at 775.488 kb on - strand, within RPSI07_RS02765at 775.488 kb on - strand, within RPSI07_RS02765at 775.488 kb on - strand, within RPSI07_RS02765at 775.488 kb on - strand, within RPSI07_RS02765at 775.488 kb on - strand, within RPSI07_RS02765at 775.488 kb on - strand, within RPSI07_RS02765at 775.488 kb on - strand, within RPSI07_RS02765at 775.526 kb on + strand, within RPSI07_RS02765at 775.526 kb on + strand, within RPSI07_RS02765at 775.583 kb on + strand, within RPSI07_RS02765at 775.583 kb on + strand, within RPSI07_RS02765at 775.583 kb on + strand, within RPSI07_RS02765at 775.584 kb on - strand, within RPSI07_RS02765at 775.584 kb on - strand, within RPSI07_RS02765at 775.584 kb on - strand, within RPSI07_RS02765at 775.589 kb on + strand, within RPSI07_RS02765at 775.589 kb on + strand, within RPSI07_RS02765at 775.589 kb on + strand, within RPSI07_RS02765at 775.589 kb on + strand, within RPSI07_RS02765at 775.590 kb on - strand, within RPSI07_RS02765at 775.590 kb on - strand, within RPSI07_RS02765at 775.590 kb on - strand, within RPSI07_RS02765at 775.590 kb on - strand, within RPSI07_RS02765at 775.590 kb on - strandat 775.590 kb on - strand, within RPSI07_RS02765at 775.598 kb on + strand, within RPSI07_RS02765at 775.598 kb on + strand, within RPSI07_RS02765at 775.598 kb on + strand, within RPSI07_RS02765at 775.599 kb on - strand, within RPSI07_RS02765at 775.622 kb on + strand, within RPSI07_RS02765at 775.622 kb on + strand, within RPSI07_RS02765at 775.622 kb on + strand, within RPSI07_RS02765at 775.623 kb on - strand, within RPSI07_RS02765at 775.623 kb on - strand, within RPSI07_RS02765at 775.623 kb on - strand, within RPSI07_RS02765at 775.680 kb on - strand, within RPSI07_RS02765at 775.680 kb on - strand, within RPSI07_RS02765at 775.680 kb on - strand, within RPSI07_RS02765at 775.680 kb on - strand, within RPSI07_RS02765at 775.692 kb on - strand, within RPSI07_RS02765at 775.772 kb on + strand, within RPSI07_RS02765at 775.772 kb on + strand, within RPSI07_RS02765at 775.772 kb on + strand, within RPSI07_RS02765at 775.773 kb on - strand, within RPSI07_RS02765at 775.800 kb on - strand, within RPSI07_RS02765at 775.835 kb on + strand, within RPSI07_RS02765at 775.835 kb on + strand, within RPSI07_RS02765at 775.877 kb on + strand, within RPSI07_RS02765at 775.878 kb on - strand, within RPSI07_RS02765at 775.946 kb on + strand, within RPSI07_RS02765at 775.946 kb on + strand, within RPSI07_RS02765at 775.946 kb on + strand, within RPSI07_RS02765at 775.946 kb on + strand, within RPSI07_RS02765at 775.946 kb on + strand, within RPSI07_RS02765at 775.946 kb on + strand, within RPSI07_RS02765at 775.947 kb on - strand, within RPSI07_RS02765at 775.947 kb on - strand, within RPSI07_RS02765at 775.947 kb on - strand, within RPSI07_RS02765at 775.947 kb on - strand, within RPSI07_RS02765at 775.961 kb on + strand, within RPSI07_RS02765at 775.961 kb on + strand, within RPSI07_RS02765at 775.962 kb on - strand, within RPSI07_RS02765at 775.962 kb on - strand, within RPSI07_RS02765at 775.962 kb on - strand, within RPSI07_RS02765at 775.962 kb on - strand, within RPSI07_RS02765at 775.976 kb on + strand, within RPSI07_RS02765at 775.976 kb on + strand, within RPSI07_RS02765at 775.976 kb on + strand, within RPSI07_RS02765at 775.976 kb on + strand, within RPSI07_RS02765at 775.977 kb on - strand, within RPSI07_RS02765at 775.977 kb on - strand, within RPSI07_RS02765at 776.027 kb on + strand, within RPSI07_RS02765at 776.027 kb on + strand, within RPSI07_RS02765at 776.028 kb on - strand, within RPSI07_RS02765at 776.028 kb on - strand, within RPSI07_RS02765at 776.028 kb on - strand, within RPSI07_RS02765at 776.151 kb on + strand, within RPSI07_RS02765at 776.151 kb on + strand, within RPSI07_RS02765at 776.152 kb on - strand, within RPSI07_RS02765at 776.264 kb on + strandat 776.291 kb on + strandat 776.355 kb on + strandat 776.355 kb on + strandat 776.356 kb on - strandat 776.356 kb on - strandat 776.356 kb on - strandat 776.400 kb on + strand, within RPSI07_RS02770at 776.400 kb on + strand, within RPSI07_RS02770at 776.401 kb on - strand, within RPSI07_RS02770at 776.401 kb on - strand, within RPSI07_RS02770at 776.401 kb on - strand, within RPSI07_RS02770at 776.579 kb on + strand, within RPSI07_RS02770at 776.579 kb on + strand, within RPSI07_RS02770at 776.580 kb on - strand, within RPSI07_RS02770at 776.580 kb on - strand, within RPSI07_RS02770at 776.613 kb on + strand, within RPSI07_RS02770at 776.614 kb on - strand, within RPSI07_RS02770at 776.614 kb on - strand, within RPSI07_RS02770at 776.614 kb on - strand, within RPSI07_RS02770at 776.640 kb on + strandat 776.641 kb on - strandat 776.641 kb on - strandat 776.641 kb on - strandat 776.647 kb on + strandat 776.648 kb on - strandat 776.679 kb on - strandat 776.681 kb on - strandat 776.742 kb on + strandat 776.743 kb on - strandat 776.752 kb on + strandat 776.753 kb on - strandat 776.753 kb on - strandat 776.764 kb on + strandat 776.764 kb on + strandat 776.764 kb on + strandat 776.765 kb on - strandat 776.785 kb on + strandat 776.786 kb on - strandat 776.861 kb on + strandat 776.861 kb on + strandat 776.861 kb on + strandat 776.861 kb on + strandat 776.861 kb on + strandat 776.862 kb on - strandat 776.936 kb on + strand, within RPSI07_RS02775at 776.936 kb on + strand, within RPSI07_RS02775at 776.936 kb on + strand, within RPSI07_RS02775at 776.936 kb on + strand, within RPSI07_RS02775at 776.936 kb on + strand, within RPSI07_RS02775at 776.936 kb on + strand, within RPSI07_RS02775at 776.936 kb on + strand, within RPSI07_RS02775at 776.936 kb on + strand, within RPSI07_RS02775at 776.937 kb on - strand, within RPSI07_RS02775at 776.937 kb on - strand, within RPSI07_RS02775at 776.937 kb on - strand, within RPSI07_RS02775at 776.937 kb on - strand, within RPSI07_RS02775at 776.937 kb on - strand, within RPSI07_RS02775at 776.937 kb on - strand, within RPSI07_RS02775at 776.960 kb on + strand, within RPSI07_RS02775at 776.960 kb on + strand, within RPSI07_RS02775at 776.960 kb on + strand, within RPSI07_RS02775at 776.960 kb on + strand, within RPSI07_RS02775at 776.960 kb on + strand, within RPSI07_RS02775at 776.961 kb on - strand, within RPSI07_RS02775at 776.961 kb on - strand, within RPSI07_RS02775at 776.961 kb on - strand, within RPSI07_RS02775at 776.961 kb on - strand, within RPSI07_RS02775at 777.114 kb on + strand, within RPSI07_RS02775at 777.115 kb on - strand, within RPSI07_RS02775at 777.115 kb on - strand, within RPSI07_RS02775at 777.115 kb on - strand, within RPSI07_RS02775at 777.115 kb on - strand, within RPSI07_RS02775at 777.152 kb on + strand, within RPSI07_RS02775at 777.153 kb on - strand, within RPSI07_RS02775at 777.153 kb on - strand, within RPSI07_RS02775at 777.153 kb on - strand, within RPSI07_RS02775at 777.153 kb on - strand, within RPSI07_RS02775at 777.234 kb on - strand, within RPSI07_RS02775

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
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774,414 - RPSI07_RS02760 0.61 +1.7
774,536 + RPSI07_RS02760 0.68 +0.4
774,536 + RPSI07_RS02760 0.68 +3.2
774,536 + RPSI07_RS02760 0.68 -0.1
774,536 + RPSI07_RS02760 0.68 -0.6
774,536 + RPSI07_RS02760 0.68 -1.3
774,537 - RPSI07_RS02760 0.68 +1.1
774,537 - RPSI07_RS02760 0.68 -0.2
774,620 + RPSI07_RS02760 0.73 -0.2
774,620 + RPSI07_RS02760 0.73 +0.7
774,620 + RPSI07_RS02760 0.73 +0.8
774,621 - RPSI07_RS02760 0.73 -0.4
774,621 - RPSI07_RS02760 0.73 -1.2
774,621 - RPSI07_RS02760 0.73 -0.6
774,662 + RPSI07_RS02760 0.75 +2.7
774,728 + RPSI07_RS02760 0.79 +2.2
774,729 - RPSI07_RS02760 0.79 +0.5
774,729 - RPSI07_RS02760 0.79 -0.2
774,729 - RPSI07_RS02760 0.79 -1.4
774,729 - RPSI07_RS02760 0.79 +1.7
774,729 - RPSI07_RS02760 0.79 -1.9
774,956 + +0.0
774,956 + +0.4
774,956 + -0.7
774,956 + +0.8
774,956 + +2.7
774,956 + -0.6
774,957 - -0.6
775,073 + -1.2
775,119 + -0.5
775,119 + +0.1
775,119 + -0.9
775,120 - -1.2
775,141 + -0.3
775,230 + -0.5
775,230 + -0.1
775,230 + -1.7
775,230 + -2.7
775,230 + -0.0
775,230 + -0.9
775,231 - -0.1
775,259 + -0.9
775,260 - +0.7
775,377 + RPSI07_RS02765 0.10 +0.1
775,377 + RPSI07_RS02765 0.10 -2.2
775,377 + RPSI07_RS02765 0.10 +3.7
775,378 - RPSI07_RS02765 0.10 +0.7
775,379 + RPSI07_RS02765 0.10 +3.0
775,379 + RPSI07_RS02765 0.10 +0.9
775,394 + RPSI07_RS02765 0.12 -0.2
775,395 - RPSI07_RS02765 0.12 +1.1
775,395 - RPSI07_RS02765 0.12 -1.7
775,421 + RPSI07_RS02765 0.14 +1.2
775,422 - RPSI07_RS02765 0.14 -0.8
775,422 - RPSI07_RS02765 0.14 -0.3
775,487 + RPSI07_RS02765 0.20 +0.9
775,487 + RPSI07_RS02765 0.20 -0.8
775,487 + RPSI07_RS02765 0.20 -1.8
775,487 + RPSI07_RS02765 0.20 -0.2
775,487 + RPSI07_RS02765 0.20 -0.7
775,487 + RPSI07_RS02765 0.20 -1.7
775,487 + RPSI07_RS02765 0.20 -1.9
775,487 + RPSI07_RS02765 0.20 +1.5
775,488 - RPSI07_RS02765 0.20 -0.8
775,488 - RPSI07_RS02765 0.20 +1.4
775,488 - RPSI07_RS02765 0.20 +0.1
775,488 - RPSI07_RS02765 0.20 -2.2
775,488 - RPSI07_RS02765 0.20 +1.3
775,488 - RPSI07_RS02765 0.20 +0.7
775,488 - RPSI07_RS02765 0.20 -0.0
775,488 - RPSI07_RS02765 0.20 +0.4
775,488 - RPSI07_RS02765 0.20 +1.1
775,488 - RPSI07_RS02765 0.20 -0.7
775,526 + RPSI07_RS02765 0.24 +1.7
775,526 + RPSI07_RS02765 0.24 +2.2
775,583 + RPSI07_RS02765 0.29 +1.8
775,583 + RPSI07_RS02765 0.29 +0.1
775,583 + RPSI07_RS02765 0.29 -0.8
775,584 - RPSI07_RS02765 0.29 -1.0
775,584 - RPSI07_RS02765 0.29 +2.1
775,584 - RPSI07_RS02765 0.29 -0.9
775,589 + RPSI07_RS02765 0.29 -0.7
775,589 + RPSI07_RS02765 0.29 -0.8
775,589 + RPSI07_RS02765 0.29 -0.0
775,589 + RPSI07_RS02765 0.29 -4.2
775,590 - RPSI07_RS02765 0.29 +0.4
775,590 - RPSI07_RS02765 0.29 -0.4
775,590 - RPSI07_RS02765 0.29 +1.5
775,590 - RPSI07_RS02765 0.29 -0.2
775,590 - -0.5
775,590 - RPSI07_RS02765 0.29 +0.6
775,598 + RPSI07_RS02765 0.30 +2.2
775,598 + RPSI07_RS02765 0.30 +1.2
775,598 + RPSI07_RS02765 0.30 -0.7
775,599 - RPSI07_RS02765 0.30 -1.0
775,622 + RPSI07_RS02765 0.32 -1.0
775,622 + RPSI07_RS02765 0.32 -0.3
775,622 + RPSI07_RS02765 0.32 -0.2
775,623 - RPSI07_RS02765 0.32 -0.9
775,623 - RPSI07_RS02765 0.32 -0.9
775,623 - RPSI07_RS02765 0.32 -0.9
775,680 - RPSI07_RS02765 0.38 -1.5
775,680 - RPSI07_RS02765 0.38 -0.3
775,680 - RPSI07_RS02765 0.38 -0.9
775,680 - RPSI07_RS02765 0.38 -0.8
775,692 - RPSI07_RS02765 0.39 +0.1
775,772 + RPSI07_RS02765 0.46 -1.3
775,772 + RPSI07_RS02765 0.46 -0.5
775,772 + RPSI07_RS02765 0.46 -1.0
775,773 - RPSI07_RS02765 0.46 +0.9
775,800 - RPSI07_RS02765 0.48 -0.9
775,835 + RPSI07_RS02765 0.52 +0.3
775,835 + RPSI07_RS02765 0.52 -0.2
775,877 + RPSI07_RS02765 0.55 +0.3
775,878 - RPSI07_RS02765 0.55 +0.4
775,946 + RPSI07_RS02765 0.62 +0.2
775,946 + RPSI07_RS02765 0.62 +0.3
775,946 + RPSI07_RS02765 0.62 -0.7
775,946 + RPSI07_RS02765 0.62 +0.7
775,946 + RPSI07_RS02765 0.62 -0.8
775,946 + RPSI07_RS02765 0.62 +0.1
775,947 - RPSI07_RS02765 0.62 -0.5
775,947 - RPSI07_RS02765 0.62 -0.7
775,947 - RPSI07_RS02765 0.62 +0.1
775,947 - RPSI07_RS02765 0.62 -0.8
775,961 + RPSI07_RS02765 0.63 +0.5
775,961 + RPSI07_RS02765 0.63 +0.3
775,962 - RPSI07_RS02765 0.63 -1.3
775,962 - RPSI07_RS02765 0.63 -0.8
775,962 - RPSI07_RS02765 0.63 -0.2
775,962 - RPSI07_RS02765 0.63 +0.1
775,976 + RPSI07_RS02765 0.64 -0.7
775,976 + RPSI07_RS02765 0.64 -0.7
775,976 + RPSI07_RS02765 0.64 -0.2
775,976 + RPSI07_RS02765 0.64 +1.7
775,977 - RPSI07_RS02765 0.64 +0.8
775,977 - RPSI07_RS02765 0.64 -0.9
776,027 + RPSI07_RS02765 0.69 +0.7
776,027 + RPSI07_RS02765 0.69 -0.2
776,028 - RPSI07_RS02765 0.69 -0.7
776,028 - RPSI07_RS02765 0.69 -1.3
776,028 - RPSI07_RS02765 0.69 -1.2
776,151 + RPSI07_RS02765 0.80 +0.3
776,151 + RPSI07_RS02765 0.80 -2.0
776,152 - RPSI07_RS02765 0.80 -0.7
776,264 + -1.4
776,291 + -0.6
776,355 + -0.4
776,355 + +3.2
776,356 - +1.1
776,356 - -0.9
776,356 - -0.1
776,400 + RPSI07_RS02770 0.11 -0.2
776,400 + RPSI07_RS02770 0.11 -0.3
776,401 - RPSI07_RS02770 0.11 +0.7
776,401 - RPSI07_RS02770 0.11 +4.4
776,401 - RPSI07_RS02770 0.11 +0.4
776,579 + RPSI07_RS02770 0.77 +0.3
776,579 + RPSI07_RS02770 0.77 -0.8
776,580 - RPSI07_RS02770 0.77 +1.5
776,580 - RPSI07_RS02770 0.77 +0.2
776,613 + RPSI07_RS02770 0.89 -0.3
776,614 - RPSI07_RS02770 0.89 +0.8
776,614 - RPSI07_RS02770 0.89 +1.7
776,614 - RPSI07_RS02770 0.89 -1.2
776,640 + -0.3
776,641 - -1.3
776,641 - +0.1
776,641 - -0.3
776,647 + +0.1
776,648 - -0.2
776,679 - +0.7
776,681 - -0.8
776,742 + -1.0
776,743 - -0.6
776,752 + -1.2
776,753 - -1.2
776,753 - +0.7
776,764 + -1.2
776,764 + -1.7
776,764 + +0.3
776,765 - +0.7
776,785 + -1.2
776,786 - -0.0
776,861 + +1.4
776,861 + -1.3
776,861 + +0.4
776,861 + -1.3
776,861 + -1.0
776,862 - -0.6
776,936 + RPSI07_RS02775 0.10 -0.2
776,936 + RPSI07_RS02775 0.10 -1.6
776,936 + RPSI07_RS02775 0.10 +0.5
776,936 + RPSI07_RS02775 0.10 +0.1
776,936 + RPSI07_RS02775 0.10 +0.3
776,936 + RPSI07_RS02775 0.10 +0.7
776,936 + RPSI07_RS02775 0.10 -0.3
776,936 + RPSI07_RS02775 0.10 -0.2
776,937 - RPSI07_RS02775 0.10 +2.0
776,937 - RPSI07_RS02775 0.10 -0.5
776,937 - RPSI07_RS02775 0.10 -1.0
776,937 - RPSI07_RS02775 0.10 -1.3
776,937 - RPSI07_RS02775 0.10 -1.1
776,937 - RPSI07_RS02775 0.10 -0.3
776,960 + RPSI07_RS02775 0.12 -1.6
776,960 + RPSI07_RS02775 0.12 +3.0
776,960 + RPSI07_RS02775 0.12 +0.2
776,960 + RPSI07_RS02775 0.12 +2.7
776,960 + RPSI07_RS02775 0.12 -0.4
776,961 - RPSI07_RS02775 0.12 +0.0
776,961 - RPSI07_RS02775 0.12 +1.2
776,961 - RPSI07_RS02775 0.12 -0.8
776,961 - RPSI07_RS02775 0.12 -0.7
777,114 + RPSI07_RS02775 0.23 +1.7
777,115 - RPSI07_RS02775 0.23 +0.4
777,115 - RPSI07_RS02775 0.23 -0.0
777,115 - RPSI07_RS02775 0.23 -0.5
777,115 - RPSI07_RS02775 0.23 -0.2
777,152 + RPSI07_RS02775 0.26 -0.2
777,153 - RPSI07_RS02775 0.26 -0.3
777,153 - RPSI07_RS02775 0.26 +2.8
777,153 - RPSI07_RS02775 0.26 +1.2
777,153 - RPSI07_RS02775 0.26 -0.0
777,234 - RPSI07_RS02775 0.31 -0.7

Or see this region's nucleotide sequence