Experiment: R2A with Oxytetracycline 0.0002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0514 and Atu0515 overlap by 1 nucleotides Atu0515 and Atu0516 overlap by 4 nucleotides Atu0516 and Atu0517 are separated by 76 nucleotides Atu0517 and Atu0518 are separated by 13 nucleotides Atu0518 and Atu0519 overlap by 4 nucleotides
Atu0514: Atu0514 - methyl-accepting chemotaxis protein, at 504,030 to 505,736
Atu0514
Atu0515: Atu0515 - hypothetical protein, at 505,736 to 506,035
Atu0515
Atu0516: Atu0516 - chemotaxis receiver protein, at 506,032 to 506,397
Atu0516
Atu0517: Atu0517 - Chemotaxis protein histidine kinase, at 506,474 to 508,687
Atu0517
Atu0518: Atu0518 - chemotaxis methyltransferase, at 508,701 to 509,609
Atu0518
Atu0519: Atu0519 - protein-glutamate methylesterase, at 509,606 to 510,661
Atu0519
Position (kb) 506
507
508
509 Strain fitness (log2 ratio) -1
0
1
2 at 505.526 kb on + strand, within Atu0514 at 505.559 kb on + strand, within Atu0514 at 505.720 kb on + strand at 505.721 kb on + strand at 505.799 kb on + strand, within Atu0515 at 505.813 kb on - strand, within Atu0515 at 505.863 kb on + strand, within Atu0515 at 505.863 kb on + strand, within Atu0515 at 505.977 kb on - strand, within Atu0515 at 506.014 kb on + strand at 506.144 kb on + strand, within Atu0516 at 506.171 kb on - strand, within Atu0516 at 506.176 kb on - strand, within Atu0516 at 506.176 kb on - strand, within Atu0516 at 506.314 kb on + strand, within Atu0516 at 506.314 kb on + strand, within Atu0516 at 506.347 kb on + strand, within Atu0516 at 506.382 kb on + strand at 506.390 kb on - strand at 506.454 kb on + strand at 506.467 kb on - strand at 506.621 kb on + strand at 506.654 kb on - strand at 506.713 kb on - strand, within Atu0517 at 506.785 kb on + strand, within Atu0517 at 506.793 kb on - strand, within Atu0517 at 506.793 kb on - strand, within Atu0517 at 506.866 kb on + strand, within Atu0517 at 506.900 kb on + strand, within Atu0517 at 506.950 kb on + strand, within Atu0517 at 506.959 kb on + strand, within Atu0517 at 507.002 kb on - strand, within Atu0517 at 507.044 kb on + strand, within Atu0517 at 507.213 kb on + strand, within Atu0517 at 507.248 kb on - strand, within Atu0517 at 507.267 kb on + strand, within Atu0517 at 507.304 kb on - strand, within Atu0517 at 507.434 kb on - strand, within Atu0517 at 507.456 kb on - strand, within Atu0517 at 507.617 kb on + strand, within Atu0517 at 507.650 kb on + strand, within Atu0517 at 507.650 kb on + strand, within Atu0517 at 507.650 kb on + strand, within Atu0517 at 507.650 kb on + strand, within Atu0517 at 507.650 kb on + strand, within Atu0517 at 507.650 kb on + strand, within Atu0517 at 507.658 kb on - strand, within Atu0517 at 507.658 kb on - strand, within Atu0517 at 507.728 kb on + strand, within Atu0517 at 507.759 kb on - strand, within Atu0517 at 507.778 kb on - strand, within Atu0517 at 507.797 kb on + strand, within Atu0517 at 507.826 kb on - strand, within Atu0517 at 507.842 kb on + strand, within Atu0517 at 507.850 kb on - strand, within Atu0517 at 507.850 kb on - strand, within Atu0517 at 507.907 kb on + strand, within Atu0517 at 507.914 kb on - strand, within Atu0517 at 507.925 kb on + strand, within Atu0517 at 507.943 kb on - strand, within Atu0517 at 508.042 kb on - strand, within Atu0517 at 508.146 kb on + strand, within Atu0517 at 508.235 kb on - strand, within Atu0517 at 508.245 kb on + strand, within Atu0517 at 508.245 kb on + strand, within Atu0517 at 508.250 kb on - strand, within Atu0517 at 508.297 kb on + strand, within Atu0517 at 508.335 kb on - strand, within Atu0517 at 508.341 kb on + strand, within Atu0517 at 508.366 kb on + strand, within Atu0517 at 508.429 kb on - strand, within Atu0517 at 508.435 kb on + strand, within Atu0517 at 508.442 kb on + strand, within Atu0517 at 508.479 kb on + strand at 508.591 kb on + strand at 508.593 kb on + strand at 508.686 kb on + strand at 508.693 kb on + strand at 508.813 kb on - strand, within Atu0518 at 508.845 kb on - strand, within Atu0518 at 508.928 kb on - strand, within Atu0518 at 509.027 kb on - strand, within Atu0518 at 509.034 kb on + strand, within Atu0518 at 509.076 kb on + strand, within Atu0518 at 509.211 kb on + strand, within Atu0518 at 509.224 kb on - strand, within Atu0518 at 509.268 kb on - strand, within Atu0518 at 509.350 kb on + strand, within Atu0518 at 509.357 kb on - strand, within Atu0518 at 509.421 kb on + strand, within Atu0518 at 509.450 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.498 kb on + strand, within Atu0518 at 509.506 kb on - strand, within Atu0518 at 509.506 kb on - strand, within Atu0518 at 509.506 kb on - strand, within Atu0518 at 509.544 kb on + strand at 509.603 kb on + strand at 509.611 kb on - strand at 509.662 kb on + strand at 509.674 kb on + strand at 509.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Oxytetracycline 0.0002 mM remove 505,526 + Atu0514 0.88 +1.6 505,559 + Atu0514 0.90 +0.2 505,720 + +0.2 505,721 + +0.7 505,799 + Atu0515 0.21 +0.5 505,813 - Atu0515 0.26 +0.5 505,863 + Atu0515 0.42 +0.8 505,863 + Atu0515 0.42 +1.1 505,977 - Atu0515 0.80 +0.7 506,014 + -0.2 506,144 + Atu0516 0.31 +0.4 506,171 - Atu0516 0.38 +0.4 506,176 - Atu0516 0.39 -0.3 506,176 - Atu0516 0.39 -0.3 506,314 + Atu0516 0.77 -0.0 506,314 + Atu0516 0.77 -0.7 506,347 + Atu0516 0.86 +0.8 506,382 + +0.6 506,390 - +0.8 506,454 + +1.5 506,467 - +0.8 506,621 + +0.3 506,654 - +0.1 506,713 - Atu0517 0.11 +0.7 506,785 + Atu0517 0.14 +0.6 506,793 - Atu0517 0.14 -0.2 506,793 - Atu0517 0.14 -1.6 506,866 + Atu0517 0.18 +0.6 506,900 + Atu0517 0.19 +0.4 506,950 + Atu0517 0.21 +0.2 506,959 + Atu0517 0.22 +0.1 507,002 - Atu0517 0.24 +0.4 507,044 + Atu0517 0.26 +0.0 507,213 + Atu0517 0.33 +0.4 507,248 - Atu0517 0.35 +0.6 507,267 + Atu0517 0.36 +0.8 507,304 - Atu0517 0.37 +0.5 507,434 - Atu0517 0.43 +1.3 507,456 - Atu0517 0.44 +0.3 507,617 + Atu0517 0.52 +0.5 507,650 + Atu0517 0.53 +0.7 507,650 + Atu0517 0.53 -0.3 507,650 + Atu0517 0.53 +1.3 507,650 + Atu0517 0.53 +1.4 507,650 + Atu0517 0.53 +0.1 507,650 + Atu0517 0.53 -1.6 507,658 - Atu0517 0.53 +0.4 507,658 - Atu0517 0.53 +0.8 507,728 + Atu0517 0.57 +0.5 507,759 - Atu0517 0.58 +0.4 507,778 - Atu0517 0.59 -0.0 507,797 + Atu0517 0.60 +0.7 507,826 - Atu0517 0.61 +0.2 507,842 + Atu0517 0.62 +2.0 507,850 - Atu0517 0.62 +0.0 507,850 - Atu0517 0.62 +0.3 507,907 + Atu0517 0.65 +0.8 507,914 - Atu0517 0.65 +0.5 507,925 + Atu0517 0.66 +0.4 507,943 - Atu0517 0.66 +0.8 508,042 - Atu0517 0.71 +0.1 508,146 + Atu0517 0.76 +0.7 508,235 - Atu0517 0.80 +0.5 508,245 + Atu0517 0.80 +1.2 508,245 + Atu0517 0.80 +1.1 508,250 - Atu0517 0.80 -0.7 508,297 + Atu0517 0.82 +0.2 508,335 - Atu0517 0.84 +0.3 508,341 + Atu0517 0.84 +0.4 508,366 + Atu0517 0.85 +0.5 508,429 - Atu0517 0.88 +0.2 508,435 + Atu0517 0.89 +0.3 508,442 + Atu0517 0.89 +0.6 508,479 + +0.6 508,591 + -0.4 508,593 + +0.4 508,686 + +1.5 508,693 + +0.4 508,813 - Atu0518 0.12 +1.0 508,845 - Atu0518 0.16 +1.0 508,928 - Atu0518 0.25 +0.9 509,027 - Atu0518 0.36 +0.6 509,034 + Atu0518 0.37 +0.2 509,076 + Atu0518 0.41 +0.8 509,211 + Atu0518 0.56 +0.2 509,224 - Atu0518 0.58 +0.2 509,268 - Atu0518 0.62 +0.1 509,350 + Atu0518 0.71 -0.3 509,357 - Atu0518 0.72 -0.0 509,421 + Atu0518 0.79 +0.3 509,450 + Atu0518 0.82 +0.1 509,498 + Atu0518 0.88 +0.4 509,498 + Atu0518 0.88 +1.3 509,498 + Atu0518 0.88 +0.8 509,498 + Atu0518 0.88 +1.1 509,498 + Atu0518 0.88 +0.4 509,506 - Atu0518 0.89 +0.7 509,506 - Atu0518 0.89 +0.9 509,506 - Atu0518 0.89 +0.8 509,544 + +0.0 509,603 + +0.7 509,611 - +0.4 509,662 + +1.0 509,674 + +0.7 509,682 - +0.4
Or see this region's nucleotide sequence