Experiment: R2A with Phosphomycin 50 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0967 and Atu0968 are separated by 1 nucleotides Atu0968 and Atu8142 are separated by 139 nucleotides Atu8142 and Atu0970 are separated by 93 nucleotides Atu0970 and Atu0971 overlap by 11 nucleotides
Atu0967: Atu0967 - hypothetical protein, at 954,323 to 958,123
Atu0967
Atu0968: Atu0968 - hypothetical protein, at 958,125 to 958,364
Atu0968
Atu8142: Atu8142 - hypothetical protein, at 958,504 to 958,758
Atu8142
Atu0970: Atu0970 - two component response regulator, at 958,852 to 959,523
Atu0970
Atu0971: Atu0971 - two component sensor kinase, at 959,513 to 960,913
Atu0971
Position (kb) 958
959
960 Strain fitness (log2 ratio) -2
-1
0
1 at 957.863 kb on + strand at 957.870 kb on + strand at 957.896 kb on - strand at 957.944 kb on + strand at 957.952 kb on + strand at 957.969 kb on + strand at 957.980 kb on - strand at 958.002 kb on + strand at 958.072 kb on + strand at 958.163 kb on - strand, within Atu0968 at 958.163 kb on - strand, within Atu0968 at 958.165 kb on + strand, within Atu0968 at 958.165 kb on + strand, within Atu0968 at 958.165 kb on + strand, within Atu0968 at 958.174 kb on - strand, within Atu0968 at 958.178 kb on + strand, within Atu0968 at 958.179 kb on + strand, within Atu0968 at 958.235 kb on - strand, within Atu0968 at 958.260 kb on + strand, within Atu0968 at 958.260 kb on + strand, within Atu0968 at 958.284 kb on + strand, within Atu0968 at 958.287 kb on - strand, within Atu0968 at 958.289 kb on + strand, within Atu0968 at 958.297 kb on - strand, within Atu0968 at 958.326 kb on + strand, within Atu0968 at 958.326 kb on + strand, within Atu0968 at 958.334 kb on - strand, within Atu0968 at 958.345 kb on - strand at 958.867 kb on + strand at 959.105 kb on - strand, within Atu0970 at 959.230 kb on - strand, within Atu0970 at 959.333 kb on - strand, within Atu0970 at 959.518 kb on + strand at 959.676 kb on - strand, within Atu0971 at 959.676 kb on - strand, within Atu0971 at 959.763 kb on + strand, within Atu0971 at 959.766 kb on - strand, within Atu0971 at 959.804 kb on + strand, within Atu0971 at 959.915 kb on - strand, within Atu0971 at 960.144 kb on - strand, within Atu0971 at 960.242 kb on - strand, within Atu0971 at 960.380 kb on + strand, within Atu0971
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Phosphomycin 50 mM remove 957,863 + -0.2 957,870 + +0.4 957,896 - -1.4 957,944 + +0.2 957,952 + -0.4 957,969 + +0.1 957,980 - +0.0 958,002 + -0.3 958,072 + +0.1 958,163 - Atu0968 0.16 -0.3 958,163 - Atu0968 0.16 +0.1 958,165 + Atu0968 0.17 -0.2 958,165 + Atu0968 0.17 -0.1 958,165 + Atu0968 0.17 +1.2 958,174 - Atu0968 0.20 +0.2 958,178 + Atu0968 0.22 +0.4 958,179 + Atu0968 0.23 +0.3 958,235 - Atu0968 0.46 +0.3 958,260 + Atu0968 0.56 +0.1 958,260 + Atu0968 0.56 +0.3 958,284 + Atu0968 0.66 +0.2 958,287 - Atu0968 0.68 -0.3 958,289 + Atu0968 0.68 +0.3 958,297 - Atu0968 0.72 +0.2 958,326 + Atu0968 0.84 +0.2 958,326 + Atu0968 0.84 -0.3 958,334 - Atu0968 0.87 +0.0 958,345 - +0.6 958,867 + -0.5 959,105 - Atu0970 0.38 -0.4 959,230 - Atu0970 0.56 +0.5 959,333 - Atu0970 0.72 +1.4 959,518 + -0.2 959,676 - Atu0971 0.12 -1.2 959,676 - Atu0971 0.12 -0.5 959,763 + Atu0971 0.18 -0.8 959,766 - Atu0971 0.18 -2.2 959,804 + Atu0971 0.21 -0.3 959,915 - Atu0971 0.29 +1.0 960,144 - Atu0971 0.45 -0.8 960,242 - Atu0971 0.52 -0.3 960,380 + Atu0971 0.62 -1.0
Or see this region's nucleotide sequence