Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS11915 and RPSI07_RS11920 overlap by 4 nucleotides RPSI07_RS11920 and RPSI07_RS11925 overlap by 8 nucleotides
RPSI07_RS11915: RPSI07_RS11915 - histidine ammonia-lyase, at 881,685 to 883,241
_RS11915
RPSI07_RS11920: RPSI07_RS11920 - formimidoylglutamase, at 883,238 to 884,221
_RS11920
RPSI07_RS11925: RPSI07_RS11925 - imidazolonepropionase, at 884,214 to 885,440
_RS11925
Position (kb) 883
884
885 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 883.004 kb on + strand, within RPSI07_RS11915 at 883.074 kb on - strand, within RPSI07_RS11915 at 883.125 kb on + strand at 883.125 kb on + strand at 883.126 kb on - strand at 883.128 kb on + strand at 883.129 kb on - strand at 883.129 kb on - strand at 883.130 kb on - strand at 883.967 kb on + strand, within RPSI07_RS11920 at 883.967 kb on + strand, within RPSI07_RS11920 at 883.967 kb on + strand, within RPSI07_RS11920 at 883.967 kb on + strand, within RPSI07_RS11920 at 884.448 kb on + strand, within RPSI07_RS11925 at 884.448 kb on + strand, within RPSI07_RS11925 at 884.449 kb on - strand, within RPSI07_RS11925 at 884.500 kb on - strand, within RPSI07_RS11925 at 884.508 kb on - strand, within RPSI07_RS11925 at 884.565 kb on + strand, within RPSI07_RS11925 at 884.787 kb on + strand, within RPSI07_RS11925 at 884.787 kb on + strand, within RPSI07_RS11925 at 884.787 kb on + strand, within RPSI07_RS11925 at 884.788 kb on - strand, within RPSI07_RS11925 at 884.788 kb on - strand, within RPSI07_RS11925 at 884.991 kb on + strand, within RPSI07_RS11925 at 885.093 kb on + strand, within RPSI07_RS11925 at 885.093 kb on + strand, within RPSI07_RS11925 at 885.093 kb on + strand, within RPSI07_RS11925 at 885.095 kb on - strand, within RPSI07_RS11925
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days remove 883,004 + RPSI07_RS11915 0.85 -1.0 883,074 - RPSI07_RS11915 0.89 +0.7 883,125 + +0.3 883,125 + -1.9 883,126 - -0.7 883,128 + -0.4 883,129 - -0.4 883,129 - +2.1 883,130 - +0.3 883,967 + RPSI07_RS11920 0.74 -0.7 883,967 + RPSI07_RS11920 0.74 -1.2 883,967 + RPSI07_RS11920 0.74 -1.1 883,967 + RPSI07_RS11920 0.74 -0.4 884,448 + RPSI07_RS11925 0.19 +1.1 884,448 + RPSI07_RS11925 0.19 -0.4 884,449 - RPSI07_RS11925 0.19 -0.4 884,500 - RPSI07_RS11925 0.23 -0.9 884,508 - RPSI07_RS11925 0.24 -0.8 884,565 + RPSI07_RS11925 0.29 +2.1 884,787 + RPSI07_RS11925 0.47 -0.8 884,787 + RPSI07_RS11925 0.47 +1.3 884,787 + RPSI07_RS11925 0.47 +3.4 884,788 - RPSI07_RS11925 0.47 -1.9 884,788 - RPSI07_RS11925 0.47 -0.7 884,991 + RPSI07_RS11925 0.63 -1.4 885,093 + RPSI07_RS11925 0.72 -0.0 885,093 + RPSI07_RS11925 0.72 -0.3 885,093 + RPSI07_RS11925 0.72 +0.1 885,095 - RPSI07_RS11925 0.72 -0.4
Or see this region's nucleotide sequence