Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS04670

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS04660 and RPSI07_RS04665 are separated by 91 nucleotidesRPSI07_RS04665 and RPSI07_RS04670 are separated by 10 nucleotidesRPSI07_RS04670 and RPSI07_RS04675 are separated by 2 nucleotides RPSI07_RS04660: RPSI07_RS04660 - aspartate aminotransferase family protein, at 1,260,970 to 1,262,373 _RS04660 RPSI07_RS04665: RPSI07_RS04665 - Lrp/AsnC family transcriptional regulator, at 1,262,465 to 1,262,959 _RS04665 RPSI07_RS04670: RPSI07_RS04670 - oxidoreductase (2fe-2S ferredoxin like subunit), at 1,262,970 to 1,263,344 _RS04670 RPSI07_RS04675: RPSI07_RS04675 - NAD(P)/FAD-dependent oxidoreductase, at 1,263,347 to 1,264,747 _RS04675 Position (kb) 1262 1263 1264Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1262.544 kb on + strand, within RPSI07_RS04665at 1262.544 kb on + strand, within RPSI07_RS04665at 1262.544 kb on + strand, within RPSI07_RS04665at 1262.544 kb on + strand, within RPSI07_RS04665at 1262.544 kb on + strand, within RPSI07_RS04665at 1262.544 kb on + strand, within RPSI07_RS04665at 1262.544 kb on + strand, within RPSI07_RS04665at 1262.786 kb on + strand, within RPSI07_RS04665at 1262.792 kb on + strand, within RPSI07_RS04665at 1262.793 kb on - strand, within RPSI07_RS04665at 1262.879 kb on + strand, within RPSI07_RS04665at 1262.879 kb on + strand, within RPSI07_RS04665at 1262.880 kb on - strand, within RPSI07_RS04665at 1262.888 kb on + strand, within RPSI07_RS04665at 1262.888 kb on + strand, within RPSI07_RS04665at 1262.889 kb on - strand, within RPSI07_RS04665at 1262.889 kb on - strand, within RPSI07_RS04665at 1262.889 kb on - strand, within RPSI07_RS04665at 1262.889 kb on - strand, within RPSI07_RS04665at 1262.921 kb on + strandat 1262.921 kb on + strandat 1262.922 kb on - strandat 1262.922 kb on - strandat 1263.340 kb on + strandat 1263.346 kb on + strandat 1263.346 kb on + strandat 1263.346 kb on + strandat 1263.486 kb on - strandat 1263.518 kb on + strand, within RPSI07_RS04675at 1263.518 kb on + strand, within RPSI07_RS04675at 1263.519 kb on - strand, within RPSI07_RS04675at 1263.530 kb on + strand, within RPSI07_RS04675at 1263.531 kb on - strand, within RPSI07_RS04675at 1263.531 kb on - strand, within RPSI07_RS04675at 1263.652 kb on - strand, within RPSI07_RS04675at 1263.755 kb on + strand, within RPSI07_RS04675at 1263.756 kb on - strand, within RPSI07_RS04675at 1263.756 kb on - strand, within RPSI07_RS04675at 1263.756 kb on - strand, within RPSI07_RS04675at 1263.756 kb on - strand, within RPSI07_RS04675at 1263.845 kb on + strand, within RPSI07_RS04675at 1263.846 kb on - strand, within RPSI07_RS04675at 1263.846 kb on - strandat 1263.863 kb on + strand, within RPSI07_RS04675at 1263.864 kb on - strand, within RPSI07_RS04675at 1263.864 kb on - strand, within RPSI07_RS04675at 1263.864 kb on - strand, within RPSI07_RS04675at 1263.864 kb on - strand, within RPSI07_RS04675at 1263.864 kb on - strand, within RPSI07_RS04675at 1263.864 kb on - strand, within RPSI07_RS04675at 1264.259 kb on + strand, within RPSI07_RS04675at 1264.259 kb on + strand, within RPSI07_RS04675at 1264.259 kb on + strand, within RPSI07_RS04675

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
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1,262,544 + RPSI07_RS04665 0.16 +0.3
1,262,544 + RPSI07_RS04665 0.16 -0.6
1,262,544 + RPSI07_RS04665 0.16 -0.4
1,262,544 + RPSI07_RS04665 0.16 -0.1
1,262,544 + RPSI07_RS04665 0.16 -1.5
1,262,544 + RPSI07_RS04665 0.16 +0.1
1,262,544 + RPSI07_RS04665 0.16 +1.0
1,262,786 + RPSI07_RS04665 0.65 -0.9
1,262,792 + RPSI07_RS04665 0.66 -1.8
1,262,793 - RPSI07_RS04665 0.66 -0.0
1,262,879 + RPSI07_RS04665 0.84 -0.4
1,262,879 + RPSI07_RS04665 0.84 +0.5
1,262,880 - RPSI07_RS04665 0.84 -1.3
1,262,888 + RPSI07_RS04665 0.85 -0.0
1,262,888 + RPSI07_RS04665 0.85 -0.2
1,262,889 - RPSI07_RS04665 0.86 -0.2
1,262,889 - RPSI07_RS04665 0.86 -0.8
1,262,889 - RPSI07_RS04665 0.86 -1.4
1,262,889 - RPSI07_RS04665 0.86 +0.3
1,262,921 + -2.9
1,262,921 + -1.4
1,262,922 - -0.1
1,262,922 - -0.9
1,263,340 + -0.2
1,263,346 + -0.5
1,263,346 + +0.6
1,263,346 + -1.0
1,263,486 - -0.3
1,263,518 + RPSI07_RS04675 0.12 -1.1
1,263,518 + RPSI07_RS04675 0.12 -0.2
1,263,519 - RPSI07_RS04675 0.12 -0.3
1,263,530 + RPSI07_RS04675 0.13 +0.3
1,263,531 - RPSI07_RS04675 0.13 +0.9
1,263,531 - RPSI07_RS04675 0.13 -0.2
1,263,652 - RPSI07_RS04675 0.22 +2.8
1,263,755 + RPSI07_RS04675 0.29 +0.4
1,263,756 - RPSI07_RS04675 0.29 +1.7
1,263,756 - RPSI07_RS04675 0.29 -1.9
1,263,756 - RPSI07_RS04675 0.29 +0.9
1,263,756 - RPSI07_RS04675 0.29 -1.0
1,263,845 + RPSI07_RS04675 0.36 +0.7
1,263,846 - RPSI07_RS04675 0.36 +0.0
1,263,846 - -1.7
1,263,863 + RPSI07_RS04675 0.37 +1.0
1,263,864 - RPSI07_RS04675 0.37 +0.3
1,263,864 - RPSI07_RS04675 0.37 -0.4
1,263,864 - RPSI07_RS04675 0.37 +0.4
1,263,864 - RPSI07_RS04675 0.37 -0.2
1,263,864 - RPSI07_RS04675 0.37 -1.4
1,263,864 - RPSI07_RS04675 0.37 -0.0
1,264,259 + RPSI07_RS04675 0.65 +1.7
1,264,259 + RPSI07_RS04675 0.65 -0.9
1,264,259 + RPSI07_RS04675 0.65 +0.7

Or see this region's nucleotide sequence