Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS04120

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
1,114,437	+		RPSI07_RS24370	0.81	+0.7
1,114,537	+				-1.4
1,114,538	-				+0.3
1,114,548	+				+0.7
1,114,548	+				-0.8
1,114,549	-				+0.2
1,114,617	-				-0.4
1,114,798	+		RPSI07_RS04115	0.19	+0.3
1,114,799	-		RPSI07_RS04115	0.19	+3.3
1,114,830	+		RPSI07_RS04115	0.25	+0.7
1,114,830	+		RPSI07_RS04115	0.25	-2.3
1,114,830	+		RPSI07_RS04115	0.25	-0.2
1,114,830	+		RPSI07_RS04115	0.25	-0.1
1,114,831	-		RPSI07_RS04115	0.26	-0.9
1,114,831	-		RPSI07_RS04115	0.26	+0.8
1,114,831	-		RPSI07_RS04115	0.26	-0.5
1,114,831	-		RPSI07_RS04115	0.26	-2.2
1,114,831	-		RPSI07_RS04115	0.26	-2.0
1,114,876	+		RPSI07_RS04115	0.34	-0.5
1,114,876	+		RPSI07_RS04115	0.34	-0.1
1,114,876	+		RPSI07_RS04115	0.34	+0.3
1,114,876	+		RPSI07_RS04115	0.34	-0.1
1,114,877	-		RPSI07_RS04115	0.34	+0.7
1,114,877	-		RPSI07_RS04115	0.34	+0.8
1,114,877	-		RPSI07_RS04115	0.34	-0.3
1,114,877	-		RPSI07_RS04115	0.34	-1.2
1,114,893	+		RPSI07_RS04115	0.38	-0.7
1,114,942	+		RPSI07_RS04115	0.47	+1.0
1,114,942	+		RPSI07_RS04115	0.47	-0.7
1,114,942	+		RPSI07_RS04115	0.47	-1.0
1,114,943	-		RPSI07_RS04115	0.47	-1.1
1,114,943	-		RPSI07_RS04115	0.47	-0.9
1,114,954	+		RPSI07_RS04115	0.49	+0.7
1,114,954	+		RPSI07_RS04115	0.49	+0.4
1,114,971	-		RPSI07_RS04115	0.53	-0.6
1,115,000	+		RPSI07_RS04115	0.58	-0.3
1,115,000	+		RPSI07_RS04115	0.58	+0.7
1,115,000	+		RPSI07_RS04115	0.58	+0.7
1,115,000	+		RPSI07_RS04115	0.58	-0.0
1,115,000	+		RPSI07_RS04115	0.58	+0.7
1,115,000	+		RPSI07_RS04115	0.58	-0.6
1,115,000	+		RPSI07_RS04115	0.58	+1.7
1,115,001	-		RPSI07_RS04115	0.58	+1.7
1,115,001	-		RPSI07_RS04115	0.58	-0.3
1,115,001	-		RPSI07_RS04115	0.58	-0.2
1,115,019	+		RPSI07_RS04115	0.62	+0.0
1,115,019	+		RPSI07_RS04115	0.62	+2.7
1,115,019	+		RPSI07_RS04115	0.62	-0.4
1,115,019	+		RPSI07_RS04115	0.62	-0.2
1,115,019	+		RPSI07_RS04115	0.62	+0.7
1,115,019	+		RPSI07_RS04115	0.62	-0.1
1,115,019	+		RPSI07_RS04115	0.62	-0.6
1,115,019	+		RPSI07_RS04115	0.62	+0.1
1,115,019	+		RPSI07_RS04115	0.62	-0.8
1,115,020	-				+0.7
1,115,020	-		RPSI07_RS04115	0.62	+0.0
1,115,020	-		RPSI07_RS04115	0.62	+0.7
1,115,020	-		RPSI07_RS04115	0.62	+0.1
1,115,020	-		RPSI07_RS04115	0.62	-0.1
1,115,139	+		RPSI07_RS04115	0.85	-0.6
1,115,140	-		RPSI07_RS04115	0.85	-0.9
1,115,140	-		RPSI07_RS04115	0.85	+0.3
1,115,140	-		RPSI07_RS04115	0.85	-0.3
1,115,190	+				-1.6
1,115,190	+				-0.8
1,115,214	+				+2.5
1,115,214	+				+1.0
1,115,215	-				+0.1
1,115,215	-				-0.3
1,115,215	-				+2.0
1,115,318	+				+1.4
1,115,319	-				+3.0
1,115,329	+				+2.3
1,115,329	+				-0.0
1,115,329	+				+1.7
1,115,329	+				+0.9
1,115,329	+				-0.7
1,115,329	+				-1.9
1,115,330	-				-0.3
1,115,330	-				+0.3
1,115,330	-				-0.1
1,115,330	-				-0.6
1,115,330	-				-0.5
1,115,330	-				+2.7
1,115,348	+				+0.7
1,115,472	-				+0.5
1,115,472	-				-0.3
1,115,558	+		RPSI07_RS04120	0.13	+0.2
1,115,558	+		RPSI07_RS04120	0.13	+0.4
1,115,558	+		RPSI07_RS04120	0.13	+0.1
1,115,558	+		RPSI07_RS04120	0.13	+0.5
1,115,558	+		RPSI07_RS04120	0.13	+0.2
1,115,558	+		RPSI07_RS04120	0.13	-0.4
1,115,558	+		RPSI07_RS04120	0.13	+1.3
1,115,558	+		RPSI07_RS04120	0.13	+0.7
1,115,558	+		RPSI07_RS04120	0.13	-0.3
1,115,558	+		RPSI07_RS04120	0.13	-0.6
1,115,558	+		RPSI07_RS04120	0.13	-0.9
1,115,559	-		RPSI07_RS04120	0.13	+2.3
1,115,559	-		RPSI07_RS04120	0.13	+0.0
1,115,559	-		RPSI07_RS04120	0.13	-0.6
1,115,559	-		RPSI07_RS04120	0.13	+1.2
1,115,559	-		RPSI07_RS04120	0.13	-1.6
1,115,559	-		RPSI07_RS04120	0.13	+3.0
1,115,559	-		RPSI07_RS04120	0.13	-1.6
1,115,559	-		RPSI07_RS04120	0.13	-0.1
1,115,559	-		RPSI07_RS04120	0.13	+0.5
1,115,559	-		RPSI07_RS04120	0.13	+3.9
1,115,559	-		RPSI07_RS04120	0.13	+0.7
1,115,559	-		RPSI07_RS04120	0.13	-0.6
1,115,606	+		RPSI07_RS04120	0.15	-0.7
1,115,607	-		RPSI07_RS04120	0.15	+1.5
1,115,607	-		RPSI07_RS04120	0.15	-0.3
1,115,657	+		RPSI07_RS04120	0.17	-0.6
1,115,657	+		RPSI07_RS04120	0.17	+3.3
1,115,658	-		RPSI07_RS04120	0.17	-1.6
1,115,658	-		RPSI07_RS04120	0.17	+0.1
1,115,658	-		RPSI07_RS04120	0.17	-0.4
1,115,658	-		RPSI07_RS04120	0.17	+2.3
1,115,828	+		RPSI07_RS04120	0.24	+1.1
1,115,828	+		RPSI07_RS04120	0.24	-0.6
1,115,828	+		RPSI07_RS04120	0.24	+2.1
1,115,828	+		RPSI07_RS04120	0.24	-0.2
1,115,828	+		RPSI07_RS04120	0.24	+1.7
1,115,829	-		RPSI07_RS04120	0.24	+0.2
1,115,829	-		RPSI07_RS04120	0.24	-0.2
1,115,829	-		RPSI07_RS04120	0.24	-0.3
1,115,829	-		RPSI07_RS04120	0.24	+0.9
1,115,885	+		RPSI07_RS04120	0.26	+0.4
1,115,885	+		RPSI07_RS04120	0.26	+0.2
1,115,885	+		RPSI07_RS04120	0.26	-0.7
1,115,886	-		RPSI07_RS04120	0.26	+3.5
1,115,886	-		RPSI07_RS04120	0.26	-0.3
1,115,886	-		RPSI07_RS04120	0.26	-0.4
1,115,886	-		RPSI07_RS04120	0.26	+2.3
1,115,936	+		RPSI07_RS04120	0.28	-1.0
1,115,936	+		RPSI07_RS04120	0.28	+0.2
1,115,954	+		RPSI07_RS04120	0.29	+0.7
1,115,954	+		RPSI07_RS04120	0.29	-0.6
1,115,955	-		RPSI07_RS04120	0.29	+1.1
1,115,955	-		RPSI07_RS04120	0.29	+0.7
1,115,955	-		RPSI07_RS04120	0.29	-0.3
1,115,955	-		RPSI07_RS04120	0.29	+0.8
1,115,982	+		RPSI07_RS04120	0.30	+0.7
1,115,983	-		RPSI07_RS04120	0.30	+0.1
1,115,983	-		RPSI07_RS04120	0.30	-0.1
1,116,071	-		RPSI07_RS04120	0.34	-0.4
1,116,071	-		RPSI07_RS04120	0.34	-0.6
1,116,071	-		RPSI07_RS04120	0.34	+0.6
1,116,176	+		RPSI07_RS04120	0.38	-0.5
1,116,176	+		RPSI07_RS04120	0.38	-0.7
1,116,176	+		RPSI07_RS04120	0.38	-1.5
1,116,176	+		RPSI07_RS04120	0.38	+1.2
1,116,176	+		RPSI07_RS04120	0.38	+1.7
1,116,176	+		RPSI07_RS04120	0.38	+2.4
1,116,176	+		RPSI07_RS04120	0.38	-0.6
1,116,176	+		RPSI07_RS04120	0.38	-0.8
1,116,176	+		RPSI07_RS04120	0.38	-0.3
1,116,177	-		RPSI07_RS04120	0.38	-0.6
1,116,177	-		RPSI07_RS04120	0.38	+0.1
1,116,177	-		RPSI07_RS04120	0.38	+0.8
1,116,177	-		RPSI07_RS04120	0.38	-0.2
1,116,177	-		RPSI07_RS04120	0.38	+2.0
1,116,177	-		RPSI07_RS04120	0.38	+1.1
1,116,177	-		RPSI07_RS04120	0.38	-0.5
1,116,222	-		RPSI07_RS04120	0.40	+0.6
1,116,295	-		RPSI07_RS04120	0.43	-0.3
1,116,332	+		RPSI07_RS04120	0.44	+2.3
1,116,333	-		RPSI07_RS04120	0.44	+0.3
1,116,333	-		RPSI07_RS04120	0.44	+1.1
1,116,333	-		RPSI07_RS04120	0.44	+0.3
1,116,377	+		RPSI07_RS04120	0.46	+2.0
1,116,377	+		RPSI07_RS04120	0.46	-0.4
1,116,378	-		RPSI07_RS04120	0.46	-0.1
1,116,410	+		RPSI07_RS04120	0.48	+2.7
1,116,410	+		RPSI07_RS04120	0.48	+0.7
1,116,411	-		RPSI07_RS04120	0.48	-0.7
1,116,411	-		RPSI07_RS04120	0.48	+0.4
1,116,411	-		RPSI07_RS04120	0.48	+0.7
1,116,411	-		RPSI07_RS04120	0.48	+0.7
1,116,411	-		RPSI07_RS04120	0.48	+3.5
1,116,411	-		RPSI07_RS04120	0.48	-0.5
1,116,411	-		RPSI07_RS04120	0.48	-0.9
1,116,411	-		RPSI07_RS04120	0.48	-0.5
1,116,454	+		RPSI07_RS04120	0.49	-0.3
1,116,510	-		RPSI07_RS04120	0.52	-0.7
1,116,510	-		RPSI07_RS04120	0.52	+2.3
1,116,510	-		RPSI07_RS04120	0.52	-0.8
1,116,545	+		RPSI07_RS04120	0.53	+0.3
1,116,545	+		RPSI07_RS04120	0.53	-0.5
1,116,545	+		RPSI07_RS04120	0.53	+1.7
1,116,545	+		RPSI07_RS04120	0.53	+0.5
1,116,545	+		RPSI07_RS04120	0.53	-0.7
1,116,545	+		RPSI07_RS04120	0.53	-0.1
1,116,545	+		RPSI07_RS04120	0.53	-0.7
1,116,545	+		RPSI07_RS04120	0.53	-0.1
1,116,546	-		RPSI07_RS04120	0.53	+0.2
1,116,546	-		RPSI07_RS04120	0.53	-0.5
1,116,546	-		RPSI07_RS04120	0.53	+0.8
1,116,546	-		RPSI07_RS04120	0.53	-0.4
1,116,546	-		RPSI07_RS04120	0.53	+0.3
1,116,546	-		RPSI07_RS04120	0.53	-0.3
1,116,546	-		RPSI07_RS04120	0.53	+0.8
1,116,546	-		RPSI07_RS04120	0.53	-2.6
1,116,546	-		RPSI07_RS04120	0.53	-2.1
1,116,584	+		RPSI07_RS04120	0.55	+1.1
1,116,584	+		RPSI07_RS04120	0.55	+0.3
1,116,584	+		RPSI07_RS04120	0.55	+0.2
1,116,584	+		RPSI07_RS04120	0.55	+0.2
1,116,584	+		RPSI07_RS04120	0.55	-1.9
1,116,584	+		RPSI07_RS04120	0.55	-0.8
1,116,584	+		RPSI07_RS04120	0.55	+0.1
1,116,584	+		RPSI07_RS04120	0.55	+1.0
1,116,584	+		RPSI07_RS04120	0.55	+0.7
1,116,585	-		RPSI07_RS04120	0.55	+0.2
1,116,585	-		RPSI07_RS04120	0.55	+3.0
1,116,585	-		RPSI07_RS04120	0.55	+1.7
1,116,585	-		RPSI07_RS04120	0.55	+0.1
1,116,728	+		RPSI07_RS04120	0.60	-0.3
1,116,728	+		RPSI07_RS04120	0.60	+1.9
1,116,728	+		RPSI07_RS04120	0.60	-0.3
1,116,728	+		RPSI07_RS04120	0.60	+3.0
1,116,728	+		RPSI07_RS04120	0.60	-0.6
1,116,728	+		RPSI07_RS04120	0.60	-0.9
1,116,728	+		RPSI07_RS04120	0.60	+1.3
1,116,728	+		RPSI07_RS04120	0.60	-0.5
1,116,729	-		RPSI07_RS04120	0.60	-0.1
1,116,729	-		RPSI07_RS04120	0.60	+0.5
1,116,729	-		RPSI07_RS04120	0.60	+0.1
1,116,780	-		RPSI07_RS04120	0.62	-0.0
1,116,966	-		RPSI07_RS04120	0.70	-0.7
1,116,966	-		RPSI07_RS04120	0.70	-1.5
1,116,966	-		RPSI07_RS04120	0.70	+2.3
1,116,966	-		RPSI07_RS04120	0.70	+0.7
1,116,966	-		RPSI07_RS04120	0.70	-0.2
1,116,966	-		RPSI07_RS04120	0.70	+2.0
1,117,211	+		RPSI07_RS04120	0.80	-0.8
1,117,211	+		RPSI07_RS04120	0.80	-0.9
1,117,212	-		RPSI07_RS04120	0.80	-0.5
1,117,310	+		RPSI07_RS04120	0.84	+1.2
1,117,310	+		RPSI07_RS04120	0.84	+0.1
1,117,310	+		RPSI07_RS04120	0.84	+0.4
1,117,311	-		RPSI07_RS04120	0.84	+1.7
1,117,311	-		RPSI07_RS04120	0.84	+1.2
1,117,361	+		RPSI07_RS04120	0.86	-0.1
1,117,361	+		RPSI07_RS04120	0.86	-0.6
1,117,374	-		RPSI07_RS04120	0.86	-0.9
1,117,374	-		RPSI07_RS04120	0.86	-0.9
1,117,475	+				+0.7
1,117,475	+				+0.3
1,117,475	+				+0.7
1,117,475	+				+1.7
1,117,476	-				+2.3
1,117,476	-				+0.7
1,117,476	-				-0.3
1,117,477	+				-1.5
1,117,477	+				-0.1
1,117,477	+				-0.1
1,117,484	+				+0.6
1,117,484	+				+2.0
1,117,485	-				+0.8
1,117,485	-				-0.9
1,117,496	+				+0.2
1,117,496	+				-0.6
1,117,496	+				-0.9
1,117,496	+				+0.3
1,117,496	+				-0.8
1,117,496	+				-0.3
1,117,497	-				+2.3
1,117,497	-				+2.0
1,117,497	-				+1.7
1,117,497	-				-0.3
1,117,497	-				+0.1
1,117,508	+				+0.3
1,117,523	-				-0.6
1,117,616	+				-0.9
1,117,616	+				+2.8
1,117,616	+				+0.2
1,117,616	+				-0.5
1,117,616	+				+0.1
1,117,616	+				-0.9
1,117,616	+				+0.8
1,117,616	+				-2.1
1,117,617	-				-1.6
1,117,619	+				-0.8
1,117,619	+				+0.3
1,117,619	+				+2.3
1,117,619	+				+1.2
1,117,619	+				+1.1
1,117,619	+				+0.8
1,117,619	+				+0.6
1,117,619	+				-0.2
1,117,619	+				+0.2
1,117,619	+				+0.3
1,117,620	-				+1.1
1,117,620	-				+0.7
1,117,620	-				-0.2
1,117,620	-				+0.5
1,117,620	-				-1.5
1,117,620	-				+1.4
1,117,620	-				+1.0
1,117,620	-				-0.2
1,117,620	-				-0.9
1,117,620	-				+2.3
1,117,620	-				-1.0
1,117,712	+				-1.0
1,117,985	+		RPSI07_RS04125	0.29	-0.7
1,117,986	-		RPSI07_RS04125	0.30	-0.0
1,118,106	+		RPSI07_RS04125	0.67	-0.7
1,118,106	+		RPSI07_RS04125	0.67	+0.2
1,118,107	-		RPSI07_RS04125	0.67	+0.0
1,118,137	+		RPSI07_RS04125	0.76	-1.0
1,118,137	+		RPSI07_RS04125	0.76	+0.2
1,118,137	+		RPSI07_RS04125	0.76	-0.3
1,118,138	-		RPSI07_RS04125	0.77	-1.1
1,118,138	-		RPSI07_RS04125	0.77	-0.8
1,118,138	-		RPSI07_RS04125	0.77	-2.0
1,118,138	-		RPSI07_RS04125	0.77	-1.4
1,118,283	+		RPSI07_RS04130	0.12	-0.6
1,118,283	+		RPSI07_RS04130	0.12	-2.0
1,118,283	+		RPSI07_RS04130	0.12	+0.6
1,118,284	-		RPSI07_RS04130	0.12	-0.8
1,118,284	-		RPSI07_RS04130	0.12	-0.1
1,118,284	-		RPSI07_RS04130	0.12	-0.3
1,118,328	+		RPSI07_RS04130	0.21	-0.5
1,118,329	-		RPSI07_RS04130	0.21	-0.3
1,118,329	-		RPSI07_RS04130	0.21	+1.4
1,118,329	-		RPSI07_RS04130	0.21	+0.8
1,118,508	+		RPSI07_RS04130	0.58	+0.4
1,118,508	+		RPSI07_RS04130	0.58	+1.7
1,118,508	+		RPSI07_RS04130	0.58	-0.4
1,118,522	+		RPSI07_RS04130	0.61	-1.4
1,118,706	+				-0.7
1,118,707	-				+0.3