Strain Fitness in Agrobacterium fabrum C58 around Atu0974

Experiment: R2A with Polymyxin B sulfate 0.00075 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0973 and Atu0974 overlap by 4 nucleotidesAtu0974 and Atu0975 overlap by 4 nucleotides Atu0973: Atu0973 - cycH protein, at 961,700 to 962,872 Atu0973 Atu0974: Atu0974 - cytochrome-c biosynthesis heme-carrier protein cycJ, at 962,869 to 963,366 Atu0974 Atu0975: Atu0975 - cytochrome c-type synthesis protein, at 963,363 to 965,354 Atu0975 Position (kb) 962 963 964Strain fitness (log2 ratio) -1 0 1at 962.211 kb on + strand, within Atu0973at 962.213 kb on - strand, within Atu0973at 962.222 kb on - strand, within Atu0973at 962.438 kb on + strand, within Atu0973at 962.557 kb on + strand, within Atu0973at 962.557 kb on + strand, within Atu0973at 962.557 kb on + strand, within Atu0973at 962.557 kb on + strand, within Atu0973at 962.557 kb on + strand, within Atu0973at 962.557 kb on + strand, within Atu0973at 962.557 kb on + strand, within Atu0973at 962.565 kb on - strand, within Atu0973at 962.565 kb on - strand, within Atu0973at 962.565 kb on - strand, within Atu0973at 962.585 kb on + strand, within Atu0973at 962.741 kb on + strand, within Atu0973at 962.816 kb on + strandat 963.335 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.00075 mM
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962,211 + Atu0973 0.44 -0.2
962,213 - Atu0973 0.44 -0.8
962,222 - Atu0973 0.45 -0.7
962,438 + Atu0973 0.63 -0.4
962,557 + Atu0973 0.73 -0.4
962,557 + Atu0973 0.73 -0.6
962,557 + Atu0973 0.73 -1.1
962,557 + Atu0973 0.73 -0.1
962,557 + Atu0973 0.73 -0.8
962,557 + Atu0973 0.73 -0.9
962,557 + Atu0973 0.73 -0.0
962,565 - Atu0973 0.74 -0.1
962,565 - Atu0973 0.74 -0.9
962,565 - Atu0973 0.74 -0.6
962,585 + Atu0973 0.75 -0.2
962,741 + Atu0973 0.89 +0.3
962,816 + -0.1
963,335 + -0.3

Or see this region's nucleotide sequence