Experiment: V2_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27700 and ABID97_RS27705 are separated by 233 nucleotides ABID97_RS27705 and ABID97_RS27710 are separated by 10 nucleotides
ABID97_RS27700: ABID97_RS27700 - HAMP domain-containing sensor histidine kinase, at 459,176 to 460,300
_RS27700
ABID97_RS27705: ABID97_RS27705 - chromate efflux transporter, at 460,534 to 461,910
_RS27705
ABID97_RS27710: ABID97_RS27710 - Fe-Mn family superoxide dismutase, at 461,921 to 462,847
_RS27710
Position (kb) 460
461
462 Strain fitness (log2 ratio) -2
-1
0
1 at 459.682 kb on - strand, within ABID97_RS27700 at 459.682 kb on - strand, within ABID97_RS27700 at 460.300 kb on + strand at 460.356 kb on - strand at 460.783 kb on + strand, within ABID97_RS27705 at 460.784 kb on - strand, within ABID97_RS27705 at 460.883 kb on - strand, within ABID97_RS27705 at 460.924 kb on + strand, within ABID97_RS27705 at 460.924 kb on + strand, within ABID97_RS27705 at 461.386 kb on + strand, within ABID97_RS27705 at 461.386 kb on + strand, within ABID97_RS27705 at 461.392 kb on + strand, within ABID97_RS27705 at 461.392 kb on + strand, within ABID97_RS27705 at 461.393 kb on - strand, within ABID97_RS27705 at 462.444 kb on - strand, within ABID97_RS27710 at 462.444 kb on - strand, within ABID97_RS27710 at 462.444 kb on - strand, within ABID97_RS27710 at 462.486 kb on - strand, within ABID97_RS27710 at 462.486 kb on - strand, within ABID97_RS27710 at 462.693 kb on - strand, within ABID97_RS27710 at 462.764 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_1 remove 459,682 - ABID97_RS27700 0.45 +0.0 459,682 - ABID97_RS27700 0.45 -0.2 460,300 + +0.1 460,356 - +0.4 460,783 + ABID97_RS27705 0.18 -0.1 460,784 - ABID97_RS27705 0.18 -0.3 460,883 - ABID97_RS27705 0.25 -0.1 460,924 + ABID97_RS27705 0.28 -0.4 460,924 + ABID97_RS27705 0.28 -0.3 461,386 + ABID97_RS27705 0.62 -0.6 461,386 + ABID97_RS27705 0.62 -0.4 461,392 + ABID97_RS27705 0.62 -0.4 461,392 + ABID97_RS27705 0.62 -0.4 461,393 - ABID97_RS27705 0.62 -0.3 462,444 - ABID97_RS27710 0.56 -2.1 462,444 - ABID97_RS27710 0.56 -0.2 462,444 - ABID97_RS27710 0.56 +0.6 462,486 - ABID97_RS27710 0.61 +0.1 462,486 - ABID97_RS27710 0.61 +0.6 462,693 - ABID97_RS27710 0.83 -2.4 462,764 + +0.2
Or see this region's nucleotide sequence