Experiment: V2_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26410 and ABID97_RS26415 are separated by 38 nucleotides ABID97_RS26415 and ABID97_RS26420 are separated by 92 nucleotides ABID97_RS26420 and ABID97_RS26425 are separated by 242 nucleotides
ABID97_RS26410: ABID97_RS26410 - TolC family protein, at 200,601 to 202,025
_RS26410
ABID97_RS26415: ABID97_RS26415 - copper oxidase, at 202,064 to 203,479
_RS26415
ABID97_RS26420: ABID97_RS26420 - copper-binding protein, at 203,572 to 203,886
_RS26420
ABID97_RS26425: ABID97_RS26425 - ABC transporter ATP-binding protein, at 204,129 to 204,629
_RS26425
Position (kb) 202
203
204 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 201.249 kb on + strand, within ABID97_RS26410 at 201.250 kb on - strand, within ABID97_RS26410 at 201.819 kb on + strand, within ABID97_RS26410 at 201.972 kb on - strand at 201.972 kb on - strand at 202.347 kb on + strand, within ABID97_RS26415 at 202.355 kb on + strand, within ABID97_RS26415 at 202.355 kb on + strand, within ABID97_RS26415 at 202.356 kb on - strand, within ABID97_RS26415 at 202.538 kb on + strand, within ABID97_RS26415 at 203.133 kb on - strand, within ABID97_RS26415 at 203.298 kb on - strand, within ABID97_RS26415 at 203.298 kb on - strand, within ABID97_RS26415 at 203.524 kb on - strand at 204.002 kb on + strand at 204.128 kb on + strand at 204.129 kb on - strand at 204.199 kb on - strand, within ABID97_RS26425 at 204.438 kb on + strand, within ABID97_RS26425 at 204.439 kb on - strand, within ABID97_RS26425 at 204.465 kb on + strand, within ABID97_RS26425 at 204.465 kb on + strand, within ABID97_RS26425
Per-strain Table
Position Strand Gene LocusTag Fraction V2_1 remove 201,249 + ABID97_RS26410 0.45 +0.2 201,250 - ABID97_RS26410 0.46 -0.5 201,819 + ABID97_RS26410 0.85 -0.6 201,972 - +0.0 201,972 - +0.1 202,347 + ABID97_RS26415 0.20 -1.8 202,355 + ABID97_RS26415 0.21 -0.3 202,355 + ABID97_RS26415 0.21 +0.1 202,356 - ABID97_RS26415 0.21 -0.0 202,538 + ABID97_RS26415 0.33 -0.0 203,133 - ABID97_RS26415 0.75 -1.1 203,298 - ABID97_RS26415 0.87 +0.3 203,298 - ABID97_RS26415 0.87 -0.2 203,524 - -0.3 204,002 + +1.9 204,128 + +1.3 204,129 - -0.3 204,199 - ABID97_RS26425 0.14 +0.4 204,438 + ABID97_RS26425 0.62 +2.9 204,439 - ABID97_RS26425 0.62 -1.5 204,465 + ABID97_RS26425 0.67 +1.3 204,465 + ABID97_RS26425 0.67 +0.3
Or see this region's nucleotide sequence