Experiment: V2_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23055 and ABID97_RS23060 overlap by 4 nucleotides ABID97_RS23060 and ABID97_RS23065 are separated by 197 nucleotides ABID97_RS23065 and ABID97_RS23070 are separated by 4 nucleotides ABID97_RS23070 and ABID97_RS23075 are separated by 78 nucleotides
ABID97_RS23055: ABID97_RS23055 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 4,772,075 to 4,773,130
_RS23055
ABID97_RS23060: ABID97_RS23060 - Nif3-like dinuclear metal center hexameric protein, at 4,773,127 to 4,773,900
_RS23060
ABID97_RS23065: ABID97_RS23065 - trypsin-like peptidase domain-containing protein, at 4,774,098 to 4,775,258
_RS23065
ABID97_RS23070: ABID97_RS23070 - twin-arginine translocase subunit TatC, at 4,775,263 to 4,776,072
_RS23070
ABID97_RS23075: ABID97_RS23075 - Sec-independent protein translocase protein TatB, at 4,776,151 to 4,776,609
_RS23075
Position (kb) 4774
4775
4776 Strain fitness (log2 ratio) -2
-1
0
1 at 4773.209 kb on + strand, within ABID97_RS23060 at 4773.209 kb on + strand, within ABID97_RS23060 at 4773.266 kb on + strand, within ABID97_RS23060 at 4773.266 kb on + strand, within ABID97_RS23060 at 4773.338 kb on + strand, within ABID97_RS23060 at 4773.338 kb on + strand, within ABID97_RS23060 at 4773.608 kb on + strand, within ABID97_RS23060 at 4773.608 kb on + strand, within ABID97_RS23060 at 4773.609 kb on - strand, within ABID97_RS23060 at 4773.831 kb on - strand at 4773.831 kb on - strand at 4773.988 kb on + strand at 4773.988 kb on + strand at 4773.988 kb on + strand at 4773.989 kb on - strand at 4774.091 kb on + strand at 4774.092 kb on - strand at 4774.092 kb on - strand at 4774.107 kb on - strand at 4774.107 kb on - strand at 4774.107 kb on - strand at 4774.152 kb on + strand at 4774.443 kb on + strand, within ABID97_RS23065 at 4774.443 kb on + strand, within ABID97_RS23065 at 4774.444 kb on - strand, within ABID97_RS23065 at 4774.444 kb on - strand, within ABID97_RS23065 at 4774.444 kb on - strand, within ABID97_RS23065 at 4774.830 kb on + strand, within ABID97_RS23065 at 4774.831 kb on - strand, within ABID97_RS23065 at 4775.324 kb on + strand at 4776.152 kb on + strand at 4776.153 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_1 remove 4,773,209 + ABID97_RS23060 0.11 +0.2 4,773,209 + ABID97_RS23060 0.11 +0.6 4,773,266 + ABID97_RS23060 0.18 +0.1 4,773,266 + ABID97_RS23060 0.18 -1.8 4,773,338 + ABID97_RS23060 0.27 -0.4 4,773,338 + ABID97_RS23060 0.27 -0.2 4,773,608 + ABID97_RS23060 0.62 +0.3 4,773,608 + ABID97_RS23060 0.62 +0.4 4,773,609 - ABID97_RS23060 0.62 -0.2 4,773,831 - -0.0 4,773,831 - +0.2 4,773,988 + -1.3 4,773,988 + -0.0 4,773,988 + -0.5 4,773,989 - +0.5 4,774,091 + -0.5 4,774,092 - -0.1 4,774,092 - -0.2 4,774,107 - -1.1 4,774,107 - -0.9 4,774,107 - -0.9 4,774,152 + -0.9 4,774,443 + ABID97_RS23065 0.30 +0.3 4,774,443 + ABID97_RS23065 0.30 -0.6 4,774,444 - ABID97_RS23065 0.30 -0.8 4,774,444 - ABID97_RS23065 0.30 -0.9 4,774,444 - ABID97_RS23065 0.30 -1.2 4,774,830 + ABID97_RS23065 0.63 -0.9 4,774,831 - ABID97_RS23065 0.63 -1.9 4,775,324 + -0.5 4,776,152 + +1.5 4,776,153 - +1.5
Or see this region's nucleotide sequence