Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18585

Experiment: V2_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18575 and ABID97_RS18580 are separated by 34 nucleotidesABID97_RS18580 and ABID97_RS18585 are separated by 11 nucleotidesABID97_RS18585 and ABID97_RS18590 are separated by 59 nucleotides ABID97_RS18575: ABID97_RS18575 - CoA transferase, at 3,828,141 to 3,828,584 _RS18575 ABID97_RS18580: ABID97_RS18580 - CoA transferase, at 3,828,619 to 3,829,356 _RS18580 ABID97_RS18585: ABID97_RS18585 - acyl-CoA dehydrogenase family protein, at 3,829,368 to 3,831,023 _RS18585 ABID97_RS18590: ABID97_RS18590 - NAD(P)/FAD-dependent oxidoreductase, at 3,831,083 to 3,832,396 _RS18590 Position (kb) 3829 3830 3831 3832Strain fitness (log2 ratio) -1 0 1at 3828.947 kb on + strand, within ABID97_RS18580at 3830.812 kb on - strand, within ABID97_RS18585at 3830.921 kb on - strandat 3830.921 kb on - strandat 3831.229 kb on - strand, within ABID97_RS18590at 3831.400 kb on - strand, within ABID97_RS18590at 3831.400 kb on - strand, within ABID97_RS18590

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_1
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3,828,947 + ABID97_RS18580 0.44 +0.1
3,830,812 - ABID97_RS18585 0.87 -1.3
3,830,921 - -0.1
3,830,921 - -1.6
3,831,229 - ABID97_RS18590 0.11 -0.4
3,831,400 - ABID97_RS18590 0.24 -0.1
3,831,400 - ABID97_RS18590 0.24 +0.5

Or see this region's nucleotide sequence