Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15905

Experiment: V2_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15895 and ABID97_RS15900 are separated by 83 nucleotidesABID97_RS15900 and ABID97_RS15905 are separated by 16 nucleotidesABID97_RS15905 and ABID97_RS15910 overlap by 4 nucleotidesABID97_RS15910 and ABID97_RS15915 are separated by 15 nucleotides ABID97_RS15895: ABID97_RS15895 - MFS transporter, at 3,294,538 to 3,296,139 _RS15895 ABID97_RS15900: ABID97_RS15900 - VOC family protein, at 3,296,223 to 3,296,699 _RS15900 ABID97_RS15905: ABID97_RS15905 - MATE family efflux transporter, at 3,296,716 to 3,298,140 _RS15905 ABID97_RS15910: ABID97_RS15910 - DUF2239 family protein, at 3,298,137 to 3,298,712 _RS15910 ABID97_RS15915: ABID97_RS15915 - AsnC family transcriptional regulator, at 3,298,728 to 3,299,204 _RS15915 Position (kb) 3296 3297 3298 3299Strain fitness (log2 ratio) -3 -2 -1 0 1at 3296.283 kb on + strand, within ABID97_RS15900at 3296.284 kb on - strand, within ABID97_RS15900at 3296.424 kb on + strand, within ABID97_RS15900at 3296.424 kb on + strand, within ABID97_RS15900at 3296.488 kb on - strand, within ABID97_RS15900at 3296.488 kb on - strand, within ABID97_RS15900at 3296.718 kb on - strandat 3296.718 kb on - strandat 3296.759 kb on + strandat 3296.762 kb on + strandat 3296.810 kb on + strandat 3296.810 kb on + strandat 3296.811 kb on - strandat 3297.212 kb on + strand, within ABID97_RS15905at 3297.213 kb on - strand, within ABID97_RS15905at 3297.213 kb on - strand, within ABID97_RS15905at 3297.239 kb on + strand, within ABID97_RS15905at 3297.239 kb on + strand, within ABID97_RS15905at 3297.264 kb on - strand, within ABID97_RS15905at 3297.675 kb on - strand, within ABID97_RS15905at 3297.962 kb on + strand, within ABID97_RS15905at 3297.963 kb on - strand, within ABID97_RS15905at 3297.963 kb on - strand, within ABID97_RS15905at 3298.594 kb on + strandat 3298.714 kb on + strandat 3298.714 kb on + strandat 3298.714 kb on + strandat 3298.714 kb on + strandat 3298.714 kb on + strandat 3298.714 kb on + strandat 3298.714 kb on + strandat 3298.715 kb on - strandat 3298.715 kb on - strandat 3298.715 kb on - strandat 3298.715 kb on - strandat 3298.715 kb on - strandat 3298.715 kb on - strandat 3298.715 kb on - strandat 3298.715 kb on - strandat 3298.715 kb on - strandat 3298.720 kb on + strandat 3298.720 kb on + strandat 3298.720 kb on + strandat 3298.721 kb on - strandat 3298.721 kb on - strandat 3298.721 kb on - strandat 3298.721 kb on - strandat 3298.721 kb on - strandat 3298.722 kb on - strandat 3298.750 kb on + strandat 3298.750 kb on + strandat 3298.751 kb on - strandat 3298.751 kb on - strandat 3298.755 kb on + strandat 3298.755 kb on + strandat 3298.981 kb on - strand, within ABID97_RS15915

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_1
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3,296,283 + ABID97_RS15900 0.13 -0.4
3,296,284 - ABID97_RS15900 0.13 +0.7
3,296,424 + ABID97_RS15900 0.42 -1.1
3,296,424 + ABID97_RS15900 0.42 -0.8
3,296,488 - ABID97_RS15900 0.56 +0.1
3,296,488 - ABID97_RS15900 0.56 +0.5
3,296,718 - +0.4
3,296,718 - -0.0
3,296,759 + -1.0
3,296,762 + +1.1
3,296,810 + +0.1
3,296,810 + -0.3
3,296,811 - -0.0
3,297,212 + ABID97_RS15905 0.35 -1.0
3,297,213 - ABID97_RS15905 0.35 +0.2
3,297,213 - ABID97_RS15905 0.35 -0.4
3,297,239 + ABID97_RS15905 0.37 -0.2
3,297,239 + ABID97_RS15905 0.37 -0.3
3,297,264 - ABID97_RS15905 0.38 -0.1
3,297,675 - ABID97_RS15905 0.67 -0.8
3,297,962 + ABID97_RS15905 0.87 -0.3
3,297,963 - ABID97_RS15905 0.88 +0.0
3,297,963 - ABID97_RS15905 0.88 -0.2
3,298,594 + -0.0
3,298,714 + -0.1
3,298,714 + +0.1
3,298,714 + -0.3
3,298,714 + +0.2
3,298,714 + +0.6
3,298,714 + +0.1
3,298,714 + +0.0
3,298,715 - +0.6
3,298,715 - +0.4
3,298,715 - -0.3
3,298,715 - +0.2
3,298,715 - -0.2
3,298,715 - +1.4
3,298,715 - +0.2
3,298,715 - +0.8
3,298,715 - +1.1
3,298,720 + +0.3
3,298,720 + -2.8
3,298,720 + +0.7
3,298,721 - +0.3
3,298,721 - -0.3
3,298,721 - -0.0
3,298,721 - +0.4
3,298,721 - -0.5
3,298,722 - -1.6
3,298,750 + +0.1
3,298,750 + -2.4
3,298,751 - -0.2
3,298,751 - +0.2
3,298,755 + -0.0
3,298,755 + -0.3
3,298,981 - ABID97_RS15915 0.53 -0.0

Or see this region's nucleotide sequence