Experiment: V2_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15895 and ABID97_RS15900 are separated by 83 nucleotides ABID97_RS15900 and ABID97_RS15905 are separated by 16 nucleotides ABID97_RS15905 and ABID97_RS15910 overlap by 4 nucleotides ABID97_RS15910 and ABID97_RS15915 are separated by 15 nucleotides
ABID97_RS15895: ABID97_RS15895 - MFS transporter, at 3,294,538 to 3,296,139
_RS15895
ABID97_RS15900: ABID97_RS15900 - VOC family protein, at 3,296,223 to 3,296,699
_RS15900
ABID97_RS15905: ABID97_RS15905 - MATE family efflux transporter, at 3,296,716 to 3,298,140
_RS15905
ABID97_RS15910: ABID97_RS15910 - DUF2239 family protein, at 3,298,137 to 3,298,712
_RS15910
ABID97_RS15915: ABID97_RS15915 - AsnC family transcriptional regulator, at 3,298,728 to 3,299,204
_RS15915
Position (kb)
3296
3297
3298
3299 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3296.283 kb on + strand, within ABID97_RS15900 at 3296.284 kb on - strand, within ABID97_RS15900 at 3296.424 kb on + strand, within ABID97_RS15900 at 3296.424 kb on + strand, within ABID97_RS15900 at 3296.488 kb on - strand, within ABID97_RS15900 at 3296.488 kb on - strand, within ABID97_RS15900 at 3296.718 kb on - strand at 3296.718 kb on - strand at 3296.759 kb on + strand at 3296.762 kb on + strand at 3296.810 kb on + strand at 3296.810 kb on + strand at 3296.811 kb on - strand at 3297.212 kb on + strand, within ABID97_RS15905 at 3297.213 kb on - strand, within ABID97_RS15905 at 3297.213 kb on - strand, within ABID97_RS15905 at 3297.239 kb on + strand, within ABID97_RS15905 at 3297.239 kb on + strand, within ABID97_RS15905 at 3297.264 kb on - strand, within ABID97_RS15905 at 3297.675 kb on - strand, within ABID97_RS15905 at 3297.962 kb on + strand, within ABID97_RS15905 at 3297.963 kb on - strand, within ABID97_RS15905 at 3297.963 kb on - strand, within ABID97_RS15905 at 3298.594 kb on + strand at 3298.714 kb on + strand at 3298.714 kb on + strand at 3298.714 kb on + strand at 3298.714 kb on + strand at 3298.714 kb on + strand at 3298.714 kb on + strand at 3298.714 kb on + strand at 3298.715 kb on - strand at 3298.715 kb on - strand at 3298.715 kb on - strand at 3298.715 kb on - strand at 3298.715 kb on - strand at 3298.715 kb on - strand at 3298.715 kb on - strand at 3298.715 kb on - strand at 3298.715 kb on - strand at 3298.720 kb on + strand at 3298.720 kb on + strand at 3298.720 kb on + strand at 3298.721 kb on - strand at 3298.721 kb on - strand at 3298.721 kb on - strand at 3298.721 kb on - strand at 3298.721 kb on - strand at 3298.722 kb on - strand at 3298.750 kb on + strand at 3298.750 kb on + strand at 3298.751 kb on - strand at 3298.751 kb on - strand at 3298.755 kb on + strand at 3298.755 kb on + strand at 3298.981 kb on - strand, within ABID97_RS15915
Per-strain Table
Position Strand Gene LocusTag Fraction V2_1 remove 3,296,283 + ABID97_RS15900 0.13 -0.4 3,296,284 - ABID97_RS15900 0.13 +0.7 3,296,424 + ABID97_RS15900 0.42 -1.1 3,296,424 + ABID97_RS15900 0.42 -0.8 3,296,488 - ABID97_RS15900 0.56 +0.1 3,296,488 - ABID97_RS15900 0.56 +0.5 3,296,718 - +0.4 3,296,718 - -0.0 3,296,759 + -1.0 3,296,762 + +1.1 3,296,810 + +0.1 3,296,810 + -0.3 3,296,811 - -0.0 3,297,212 + ABID97_RS15905 0.35 -1.0 3,297,213 - ABID97_RS15905 0.35 +0.2 3,297,213 - ABID97_RS15905 0.35 -0.4 3,297,239 + ABID97_RS15905 0.37 -0.2 3,297,239 + ABID97_RS15905 0.37 -0.3 3,297,264 - ABID97_RS15905 0.38 -0.1 3,297,675 - ABID97_RS15905 0.67 -0.8 3,297,962 + ABID97_RS15905 0.87 -0.3 3,297,963 - ABID97_RS15905 0.88 +0.0 3,297,963 - ABID97_RS15905 0.88 -0.2 3,298,594 + -0.0 3,298,714 + -0.1 3,298,714 + +0.1 3,298,714 + -0.3 3,298,714 + +0.2 3,298,714 + +0.6 3,298,714 + +0.1 3,298,714 + +0.0 3,298,715 - +0.6 3,298,715 - +0.4 3,298,715 - -0.3 3,298,715 - +0.2 3,298,715 - -0.2 3,298,715 - +1.4 3,298,715 - +0.2 3,298,715 - +0.8 3,298,715 - +1.1 3,298,720 + +0.3 3,298,720 + -2.8 3,298,720 + +0.7 3,298,721 - +0.3 3,298,721 - -0.3 3,298,721 - -0.0 3,298,721 - +0.4 3,298,721 - -0.5 3,298,722 - -1.6 3,298,750 + +0.1 3,298,750 + -2.4 3,298,751 - -0.2 3,298,751 - +0.2 3,298,755 + -0.0 3,298,755 + -0.3 3,298,981 - ABID97_RS15915 0.53 -0.0
Or see this region's nucleotide sequence