Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03620

Experiment: V2_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03610 and ABID97_RS03615 are separated by 118 nucleotidesABID97_RS03615 and ABID97_RS03620 are separated by 101 nucleotidesABID97_RS03620 and ABID97_RS03625 are separated by 216 nucleotides ABID97_RS03610: ABID97_RS03610 - pentapeptide repeat-containing protein, at 742,759 to 743,253 _RS03610 ABID97_RS03615: ABID97_RS03615 - hypothetical protein, at 743,372 to 744,085 _RS03615 ABID97_RS03620: ABID97_RS03620 - YifB family Mg chelatase-like AAA ATPase, at 744,187 to 745,740 _RS03620 ABID97_RS03625: ABID97_RS03625 - TorF family putative porin, at 745,957 to 746,782 _RS03625 Position (kb) 744 745 746Strain fitness (log2 ratio) -2 -1 0 1at 743.433 kb on + strandat 743.434 kb on - strandat 743.434 kb on - strandat 743.459 kb on + strand, within ABID97_RS03615at 743.459 kb on + strand, within ABID97_RS03615at 743.459 kb on + strand, within ABID97_RS03615at 743.460 kb on - strand, within ABID97_RS03615at 743.460 kb on - strand, within ABID97_RS03615at 743.460 kb on - strand, within ABID97_RS03615at 743.460 kb on - strand, within ABID97_RS03615at 743.478 kb on - strand, within ABID97_RS03615at 743.478 kb on - strand, within ABID97_RS03615at 743.489 kb on + strand, within ABID97_RS03615at 743.671 kb on - strand, within ABID97_RS03615at 743.775 kb on - strand, within ABID97_RS03615at 743.780 kb on + strand, within ABID97_RS03615at 743.781 kb on - strand, within ABID97_RS03615at 743.781 kb on - strand, within ABID97_RS03615at 744.083 kb on + strandat 744.083 kb on + strandat 744.083 kb on + strandat 744.136 kb on + strandat 744.137 kb on - strandat 744.174 kb on - strandat 744.174 kb on - strandat 745.136 kb on + strand, within ABID97_RS03620at 745.137 kb on - strand, within ABID97_RS03620at 745.269 kb on - strand, within ABID97_RS03620at 745.929 kb on - strandat 745.929 kb on - strandat 745.968 kb on + strandat 745.969 kb on - strandat 746.063 kb on + strand, within ABID97_RS03625at 746.063 kb on + strand, within ABID97_RS03625at 746.064 kb on - strand, within ABID97_RS03625at 746.064 kb on - strand, within ABID97_RS03625at 746.064 kb on - strand, within ABID97_RS03625at 746.064 kb on - strand, within ABID97_RS03625at 746.180 kb on + strand, within ABID97_RS03625at 746.243 kb on + strand, within ABID97_RS03625at 746.243 kb on + strand, within ABID97_RS03625at 746.244 kb on - strand, within ABID97_RS03625at 746.244 kb on - strand, within ABID97_RS03625at 746.252 kb on + strand, within ABID97_RS03625at 746.252 kb on + strand, within ABID97_RS03625at 746.300 kb on + strand, within ABID97_RS03625at 746.301 kb on - strand, within ABID97_RS03625at 746.301 kb on - strand, within ABID97_RS03625at 746.301 kb on - strand, within ABID97_RS03625at 746.301 kb on - strand, within ABID97_RS03625at 746.301 kb on - strand, within ABID97_RS03625at 746.301 kb on - strand, within ABID97_RS03625at 746.306 kb on + strand, within ABID97_RS03625at 746.306 kb on + strand, within ABID97_RS03625at 746.306 kb on + strand, within ABID97_RS03625at 746.307 kb on - strand, within ABID97_RS03625at 746.394 kb on - strand, within ABID97_RS03625at 746.417 kb on + strand, within ABID97_RS03625at 746.418 kb on - strand, within ABID97_RS03625at 746.489 kb on + strand, within ABID97_RS03625at 746.583 kb on - strand, within ABID97_RS03625at 746.583 kb on - strand, within ABID97_RS03625at 746.583 kb on - strand, within ABID97_RS03625at 746.583 kb on - strand, within ABID97_RS03625at 746.591 kb on + strand, within ABID97_RS03625at 746.592 kb on - strand, within ABID97_RS03625at 746.609 kb on + strand, within ABID97_RS03625at 746.609 kb on + strand, within ABID97_RS03625at 746.672 kb on + strand, within ABID97_RS03625at 746.672 kb on + strand, within ABID97_RS03625at 746.673 kb on - strand, within ABID97_RS03625at 746.673 kb on - strand, within ABID97_RS03625at 746.733 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_1
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743,433 + +0.0
743,434 - -0.8
743,434 - -0.3
743,459 + ABID97_RS03615 0.12 -0.1
743,459 + ABID97_RS03615 0.12 -0.5
743,459 + ABID97_RS03615 0.12 +0.3
743,460 - ABID97_RS03615 0.12 -0.0
743,460 - ABID97_RS03615 0.12 -0.2
743,460 - ABID97_RS03615 0.12 -0.4
743,460 - ABID97_RS03615 0.12 -0.1
743,478 - ABID97_RS03615 0.15 -0.4
743,478 - ABID97_RS03615 0.15 +0.1
743,489 + ABID97_RS03615 0.16 +0.0
743,671 - ABID97_RS03615 0.42 -0.2
743,775 - ABID97_RS03615 0.56 -0.0
743,780 + ABID97_RS03615 0.57 +0.4
743,781 - ABID97_RS03615 0.57 +0.2
743,781 - ABID97_RS03615 0.57 -0.1
744,083 + -0.1
744,083 + -0.2
744,083 + +0.3
744,136 + +0.9
744,137 - -0.0
744,174 - -2.2
744,174 - -0.0
745,136 + ABID97_RS03620 0.61 +0.2
745,137 - ABID97_RS03620 0.61 +1.5
745,269 - ABID97_RS03620 0.70 +0.2
745,929 - +0.2
745,929 - +0.4
745,968 + +0.0
745,969 - -0.3
746,063 + ABID97_RS03625 0.13 +0.3
746,063 + ABID97_RS03625 0.13 -0.2
746,064 - ABID97_RS03625 0.13 +0.1
746,064 - ABID97_RS03625 0.13 -0.2
746,064 - ABID97_RS03625 0.13 +0.1
746,064 - ABID97_RS03625 0.13 -0.0
746,180 + ABID97_RS03625 0.27 -0.1
746,243 + ABID97_RS03625 0.35 -0.7
746,243 + ABID97_RS03625 0.35 -0.1
746,244 - ABID97_RS03625 0.35 +0.5
746,244 - ABID97_RS03625 0.35 -0.1
746,252 + ABID97_RS03625 0.36 -0.6
746,252 + ABID97_RS03625 0.36 +0.3
746,300 + ABID97_RS03625 0.42 -0.2
746,301 - ABID97_RS03625 0.42 -0.5
746,301 - ABID97_RS03625 0.42 -0.8
746,301 - ABID97_RS03625 0.42 -0.2
746,301 - ABID97_RS03625 0.42 +0.0
746,301 - ABID97_RS03625 0.42 +1.4
746,301 - ABID97_RS03625 0.42 -0.3
746,306 + ABID97_RS03625 0.42 +0.8
746,306 + ABID97_RS03625 0.42 -0.3
746,306 + ABID97_RS03625 0.42 +0.1
746,307 - ABID97_RS03625 0.42 -0.2
746,394 - ABID97_RS03625 0.53 +0.7
746,417 + ABID97_RS03625 0.56 +0.4
746,418 - ABID97_RS03625 0.56 +0.8
746,489 + ABID97_RS03625 0.64 +0.1
746,583 - ABID97_RS03625 0.76 +0.2
746,583 - ABID97_RS03625 0.76 -0.0
746,583 - ABID97_RS03625 0.76 +0.2
746,583 - ABID97_RS03625 0.76 +0.1
746,591 + ABID97_RS03625 0.77 +0.1
746,592 - ABID97_RS03625 0.77 +0.0
746,609 + ABID97_RS03625 0.79 -0.9
746,609 + ABID97_RS03625 0.79 -0.1
746,672 + ABID97_RS03625 0.87 -0.0
746,672 + ABID97_RS03625 0.87 +0.1
746,673 - ABID97_RS03625 0.87 +0.5
746,673 - ABID97_RS03625 0.87 -0.5
746,733 - -0.3

Or see this region's nucleotide sequence