Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS01470

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRPSI07_RS01460 and RPSI07_RS01465 overlap by 4 nucleotidesRPSI07_RS01465 and RPSI07_RS01470 are separated by 55 nucleotidesRPSI07_RS01470 and RPSI07_RS01475 overlap by 11 nucleotidesRPSI07_RS01475 and RPSI07_RS01480 are separated by 1 nucleotides RPSI07_RS01460: RPSI07_RS01460 - flagellar biosynthetic protein FliP, at 392,722 to 393,471 _RS01460 RPSI07_RS01465: RPSI07_RS01465 - flagellar biosynthetic protein FliO, at 393,468 to 393,860 _RS01465 RPSI07_RS01470: RPSI07_RS01470 - flagellar motor switch protein FliN, at 393,916 to 394,395 _RS01470 RPSI07_RS01475: RPSI07_RS01475 - flagellar motor switch protein FliM, at 394,385 to 395,392 _RS01475 RPSI07_RS01480: RPSI07_RS01480 - flagellar basal body-associated protein FliL, at 395,394 to 395,885 _RS01480 Position (kb) 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2 3at 393.122 kb on + strand, within RPSI07_RS01460at 393.122 kb on + strand, within RPSI07_RS01460at 393.123 kb on - strand, within RPSI07_RS01460at 393.123 kb on - strand, within RPSI07_RS01460at 393.123 kb on - strand, within RPSI07_RS01460at 393.134 kb on + strand, within RPSI07_RS01460at 393.135 kb on - strand, within RPSI07_RS01460at 393.135 kb on - strand, within RPSI07_RS01460at 393.250 kb on + strand, within RPSI07_RS01460at 393.251 kb on - strand, within RPSI07_RS01460at 393.251 kb on - strand, within RPSI07_RS01460at 393.251 kb on - strand, within RPSI07_RS01460at 393.348 kb on - strand, within RPSI07_RS01460at 393.813 kb on + strand, within RPSI07_RS01465at 393.813 kb on + strand, within RPSI07_RS01465at 393.814 kb on - strand, within RPSI07_RS01465at 393.814 kb on - strand, within RPSI07_RS01465at 393.814 kb on - strand, within RPSI07_RS01465at 393.814 kb on - strand, within RPSI07_RS01465at 393.918 kb on - strandat 393.930 kb on + strandat 393.930 kb on + strandat 393.930 kb on + strandat 393.931 kb on - strandat 393.931 kb on - strandat 394.019 kb on + strand, within RPSI07_RS01470at 394.020 kb on - strand, within RPSI07_RS01470at 394.020 kb on - strand, within RPSI07_RS01470at 394.153 kb on - strand, within RPSI07_RS01470at 394.153 kb on - strand, within RPSI07_RS01470at 394.153 kb on - strand, within RPSI07_RS01470at 394.429 kb on + strandat 394.430 kb on - strandat 394.458 kb on + strandat 394.458 kb on + strandat 394.734 kb on + strand, within RPSI07_RS01475at 394.735 kb on - strand, within RPSI07_RS01475at 394.735 kb on - strand, within RPSI07_RS01475at 394.735 kb on - strand, within RPSI07_RS01475at 394.735 kb on - strand, within RPSI07_RS01475at 394.875 kb on + strand, within RPSI07_RS01475at 394.875 kb on + strand, within RPSI07_RS01475at 394.900 kb on - strand, within RPSI07_RS01475at 394.900 kb on - strand, within RPSI07_RS01475at 395.127 kb on + strand, within RPSI07_RS01475at 395.127 kb on + strand, within RPSI07_RS01475at 395.127 kb on + strand, within RPSI07_RS01475at 395.127 kb on + strand, within RPSI07_RS01475at 395.128 kb on - strand, within RPSI07_RS01475at 395.128 kb on - strand, within RPSI07_RS01475at 395.128 kb on - strand, within RPSI07_RS01475at 395.128 kb on - strand, within RPSI07_RS01475at 395.128 kb on - strand, within RPSI07_RS01475at 395.279 kb on + strand, within RPSI07_RS01475at 395.280 kb on + strand, within RPSI07_RS01475at 395.280 kb on + strand, within RPSI07_RS01475at 395.280 kb on + strand, within RPSI07_RS01475at 395.280 kb on + strand, within RPSI07_RS01475at 395.280 kb on + strand, within RPSI07_RS01475at 395.281 kb on - strand, within RPSI07_RS01475at 395.281 kb on - strand, within RPSI07_RS01475at 395.281 kb on - strand, within RPSI07_RS01475at 395.288 kb on + strand, within RPSI07_RS01475at 395.288 kb on + strand, within RPSI07_RS01475at 395.288 kb on + strand, within RPSI07_RS01475at 395.288 kb on + strand, within RPSI07_RS01475at 395.288 kb on + strand, within RPSI07_RS01475at 395.289 kb on - strand, within RPSI07_RS01475at 395.289 kb on - strand, within RPSI07_RS01475at 395.289 kb on - strand, within RPSI07_RS01475at 395.289 kb on - strand, within RPSI07_RS01475at 395.289 kb on - strand, within RPSI07_RS01475

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
remove
393,122 + RPSI07_RS01460 0.53 -1.3
393,122 + RPSI07_RS01460 0.53 -1.5
393,123 - RPSI07_RS01460 0.53 -0.0
393,123 - RPSI07_RS01460 0.53 -0.9
393,123 - RPSI07_RS01460 0.53 +0.4
393,134 + RPSI07_RS01460 0.55 -0.3
393,135 - RPSI07_RS01460 0.55 -0.1
393,135 - RPSI07_RS01460 0.55 -0.0
393,250 + RPSI07_RS01460 0.70 +0.0
393,251 - RPSI07_RS01460 0.71 -0.5
393,251 - RPSI07_RS01460 0.71 +0.0
393,251 - RPSI07_RS01460 0.71 -0.1
393,348 - RPSI07_RS01460 0.83 -0.4
393,813 + RPSI07_RS01465 0.88 +0.6
393,813 + RPSI07_RS01465 0.88 -0.0
393,814 - RPSI07_RS01465 0.88 -0.1
393,814 - RPSI07_RS01465 0.88 +0.8
393,814 - RPSI07_RS01465 0.88 -1.2
393,814 - RPSI07_RS01465 0.88 +0.6
393,918 - -0.6
393,930 + -1.3
393,930 + +0.9
393,930 + -1.8
393,931 - +0.2
393,931 - -0.6
394,019 + RPSI07_RS01470 0.21 +0.9
394,020 - RPSI07_RS01470 0.22 +1.3
394,020 - RPSI07_RS01470 0.22 +3.4
394,153 - RPSI07_RS01470 0.49 -0.1
394,153 - RPSI07_RS01470 0.49 -0.7
394,153 - RPSI07_RS01470 0.49 +1.0
394,429 + -2.1
394,430 - -0.1
394,458 + -0.1
394,458 + +2.4
394,734 + RPSI07_RS01475 0.35 +0.6
394,735 - RPSI07_RS01475 0.35 -0.5
394,735 - RPSI07_RS01475 0.35 -0.7
394,735 - RPSI07_RS01475 0.35 +1.9
394,735 - RPSI07_RS01475 0.35 -1.2
394,875 + RPSI07_RS01475 0.49 +0.5
394,875 + RPSI07_RS01475 0.49 -1.5
394,900 - RPSI07_RS01475 0.51 +0.9
394,900 - RPSI07_RS01475 0.51 +0.6
395,127 + RPSI07_RS01475 0.74 -0.7
395,127 + RPSI07_RS01475 0.74 -1.6
395,127 + RPSI07_RS01475 0.74 -0.7
395,127 + RPSI07_RS01475 0.74 +0.4
395,128 - RPSI07_RS01475 0.74 -0.3
395,128 - RPSI07_RS01475 0.74 +2.7
395,128 - RPSI07_RS01475 0.74 +0.1
395,128 - RPSI07_RS01475 0.74 -0.7
395,128 - RPSI07_RS01475 0.74 -0.2
395,279 + RPSI07_RS01475 0.89 +0.0
395,280 + RPSI07_RS01475 0.89 +0.9
395,280 + RPSI07_RS01475 0.89 +0.9
395,280 + RPSI07_RS01475 0.89 -1.4
395,280 + RPSI07_RS01475 0.89 -0.3
395,280 + RPSI07_RS01475 0.89 +0.9
395,281 - RPSI07_RS01475 0.89 -0.4
395,281 - RPSI07_RS01475 0.89 -0.1
395,281 - RPSI07_RS01475 0.89 -0.4
395,288 + RPSI07_RS01475 0.90 -1.0
395,288 + RPSI07_RS01475 0.90 -0.5
395,288 + RPSI07_RS01475 0.90 -0.4
395,288 + RPSI07_RS01475 0.90 -2.1
395,288 + RPSI07_RS01475 0.90 +2.9
395,289 - RPSI07_RS01475 0.90 +0.4
395,289 - RPSI07_RS01475 0.90 -0.8
395,289 - RPSI07_RS01475 0.90 +0.3
395,289 - RPSI07_RS01475 0.90 -0.3
395,289 - RPSI07_RS01475 0.90 -1.0

Or see this region's nucleotide sequence