Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS01165

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRPSI07_RS01160 and RPSI07_RS01165 are separated by 289 nucleotidesRPSI07_RS01165 and RPSI07_RS01170 are separated by 150 nucleotides RPSI07_RS01160: RPSI07_RS01160 - tetratricopeptide repeat protein, at 319,599 to 321,626 _RS01160 RPSI07_RS01165: RPSI07_RS01165 - hypothetical protein, at 321,916 to 322,320 _RS01165 RPSI07_RS01170: RPSI07_RS01170 - hypothetical protein, at 322,471 to 323,649 _RS01170 Position (kb) 321 322 323Strain fitness (log2 ratio) -2 -1 0 1 2 3at 321.232 kb on + strand, within RPSI07_RS01160at 321.233 kb on - strand, within RPSI07_RS01160at 321.233 kb on - strand, within RPSI07_RS01160at 321.250 kb on + strand, within RPSI07_RS01160at 321.250 kb on + strand, within RPSI07_RS01160at 321.250 kb on + strand, within RPSI07_RS01160at 321.251 kb on - strand, within RPSI07_RS01160at 321.251 kb on - strand, within RPSI07_RS01160at 321.296 kb on - strand, within RPSI07_RS01160at 321.296 kb on - strand, within RPSI07_RS01160at 321.353 kb on + strand, within RPSI07_RS01160at 321.353 kb on + strand, within RPSI07_RS01160at 321.353 kb on + strand, within RPSI07_RS01160at 321.354 kb on - strand, within RPSI07_RS01160at 321.354 kb on - strand, within RPSI07_RS01160at 321.354 kb on - strand, within RPSI07_RS01160at 321.354 kb on - strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.355 kb on + strand, within RPSI07_RS01160at 321.356 kb on - strand, within RPSI07_RS01160at 321.356 kb on - strand, within RPSI07_RS01160at 321.356 kb on - strand, within RPSI07_RS01160at 321.356 kb on - strand, within RPSI07_RS01160at 321.356 kb on - strand, within RPSI07_RS01160at 321.356 kb on - strand, within RPSI07_RS01160at 321.356 kb on - strand, within RPSI07_RS01160at 321.357 kb on - strand, within RPSI07_RS01160at 321.400 kb on + strand, within RPSI07_RS01160at 321.400 kb on + strand, within RPSI07_RS01160at 321.453 kb on - strandat 321.719 kb on + strandat 321.720 kb on - strandat 321.720 kb on - strandat 321.803 kb on + strandat 321.804 kb on - strandat 321.804 kb on - strandat 321.804 kb on - strandat 321.831 kb on + strandat 321.832 kb on - strandat 321.841 kb on + strandat 321.841 kb on + strandat 321.841 kb on + strandat 321.841 kb on + strandat 321.841 kb on + strandat 321.841 kb on + strandat 321.841 kb on + strandat 321.841 kb on + strandat 321.842 kb on - strandat 321.842 kb on - strandat 321.842 kb on - strandat 321.842 kb on - strandat 321.842 kb on - strandat 321.842 kb on - strandat 321.842 kb on - strandat 321.842 kb on - strandat 321.842 kb on - strandat 321.842 kb on - strandat 322.138 kb on + strand, within RPSI07_RS01165at 322.138 kb on + strand, within RPSI07_RS01165at 322.138 kb on + strand, within RPSI07_RS01165at 322.138 kb on + strand, within RPSI07_RS01165at 322.138 kb on + strand, within RPSI07_RS01165at 322.138 kb on + strand, within RPSI07_RS01165at 322.139 kb on - strand, within RPSI07_RS01165at 322.139 kb on - strand, within RPSI07_RS01165at 322.139 kb on - strand, within RPSI07_RS01165at 322.139 kb on - strand, within RPSI07_RS01165at 322.139 kb on - strand, within RPSI07_RS01165at 322.139 kb on - strand, within RPSI07_RS01165at 322.139 kb on - strand, within RPSI07_RS01165at 322.154 kb on + strand, within RPSI07_RS01165at 322.154 kb on + strand, within RPSI07_RS01165at 322.155 kb on - strand, within RPSI07_RS01165at 322.155 kb on - strand, within RPSI07_RS01165at 322.155 kb on - strand, within RPSI07_RS01165at 322.155 kb on - strand, within RPSI07_RS01165at 322.155 kb on - strand, within RPSI07_RS01165at 322.155 kb on - strand, within RPSI07_RS01165at 322.155 kb on - strand, within RPSI07_RS01165at 322.234 kb on + strand, within RPSI07_RS01165at 322.234 kb on + strand, within RPSI07_RS01165at 322.242 kb on + strand, within RPSI07_RS01165at 322.318 kb on + strandat 322.331 kb on + strandat 322.331 kb on + strandat 322.331 kb on + strandat 322.416 kb on + strandat 322.416 kb on + strandat 322.423 kb on + strandat 322.423 kb on + strandat 322.423 kb on + strandat 322.423 kb on + strandat 322.424 kb on - strandat 322.424 kb on - strandat 322.424 kb on - strandat 322.467 kb on + strandat 322.467 kb on + strandat 322.467 kb on + strandat 322.467 kb on + strandat 322.467 kb on + strandat 322.467 kb on + strandat 322.468 kb on - strandat 322.468 kb on - strandat 322.468 kb on - strandat 322.468 kb on - strandat 322.627 kb on - strand, within RPSI07_RS01170at 322.627 kb on - strand, within RPSI07_RS01170at 322.696 kb on + strand, within RPSI07_RS01170at 322.696 kb on + strand, within RPSI07_RS01170at 322.697 kb on - strand, within RPSI07_RS01170at 322.697 kb on - strand, within RPSI07_RS01170at 322.714 kb on + strand, within RPSI07_RS01170at 322.714 kb on + strand, within RPSI07_RS01170at 322.715 kb on - strand, within RPSI07_RS01170at 322.715 kb on - strand, within RPSI07_RS01170at 322.715 kb on - strand, within RPSI07_RS01170at 322.715 kb on - strand, within RPSI07_RS01170at 322.715 kb on - strand, within RPSI07_RS01170at 322.715 kb on - strand, within RPSI07_RS01170at 322.897 kb on + strand, within RPSI07_RS01170at 322.952 kb on + strand, within RPSI07_RS01170at 322.953 kb on - strand, within RPSI07_RS01170at 322.996 kb on + strand, within RPSI07_RS01170at 322.996 kb on + strand, within RPSI07_RS01170at 322.996 kb on + strand, within RPSI07_RS01170at 322.996 kb on + strand, within RPSI07_RS01170at 322.997 kb on - strand, within RPSI07_RS01170at 322.997 kb on - strand, within RPSI07_RS01170at 322.997 kb on - strand, within RPSI07_RS01170at 322.997 kb on - strand, within RPSI07_RS01170at 323.011 kb on + strand, within RPSI07_RS01170at 323.011 kb on + strand, within RPSI07_RS01170at 323.012 kb on - strand, within RPSI07_RS01170at 323.012 kb on - strand, within RPSI07_RS01170at 323.068 kb on + strand, within RPSI07_RS01170at 323.068 kb on + strand, within RPSI07_RS01170at 323.068 kb on + strand, within RPSI07_RS01170at 323.069 kb on - strand, within RPSI07_RS01170at 323.069 kb on - strand, within RPSI07_RS01170at 323.069 kb on - strand, within RPSI07_RS01170at 323.069 kb on - strand, within RPSI07_RS01170at 323.257 kb on + strand, within RPSI07_RS01170at 323.257 kb on + strand, within RPSI07_RS01170at 323.257 kb on + strand, within RPSI07_RS01170at 323.258 kb on - strand, within RPSI07_RS01170at 323.320 kb on + strand, within RPSI07_RS01170at 323.320 kb on + strand, within RPSI07_RS01170at 323.320 kb on + strand, within RPSI07_RS01170at 323.320 kb on + strand, within RPSI07_RS01170

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
remove
321,232 + RPSI07_RS01160 0.81 -0.8
321,233 - RPSI07_RS01160 0.81 -1.0
321,233 - RPSI07_RS01160 0.81 -0.5
321,250 + RPSI07_RS01160 0.81 -0.4
321,250 + RPSI07_RS01160 0.81 +1.9
321,250 + RPSI07_RS01160 0.81 +0.5
321,251 - RPSI07_RS01160 0.81 -0.7
321,251 - RPSI07_RS01160 0.81 -0.1
321,296 - RPSI07_RS01160 0.84 +0.0
321,296 - RPSI07_RS01160 0.84 -1.1
321,353 + RPSI07_RS01160 0.86 +0.3
321,353 + RPSI07_RS01160 0.86 +0.4
321,353 + RPSI07_RS01160 0.86 +0.1
321,354 - RPSI07_RS01160 0.87 -0.2
321,354 - RPSI07_RS01160 0.87 -0.3
321,354 - RPSI07_RS01160 0.87 +0.6
321,354 - RPSI07_RS01160 0.87 +3.7
321,355 + RPSI07_RS01160 0.87 -0.1
321,355 + RPSI07_RS01160 0.87 -0.1
321,355 + RPSI07_RS01160 0.87 -2.0
321,355 + RPSI07_RS01160 0.87 -0.2
321,355 + RPSI07_RS01160 0.87 -2.1
321,355 + RPSI07_RS01160 0.87 -0.5
321,355 + RPSI07_RS01160 0.87 +1.2
321,355 + RPSI07_RS01160 0.87 +1.0
321,355 + RPSI07_RS01160 0.87 +0.7
321,355 + RPSI07_RS01160 0.87 -0.1
321,355 + RPSI07_RS01160 0.87 +1.3
321,355 + RPSI07_RS01160 0.87 +0.1
321,355 + RPSI07_RS01160 0.87 +0.6
321,355 + RPSI07_RS01160 0.87 -0.6
321,356 - RPSI07_RS01160 0.87 -1.1
321,356 - RPSI07_RS01160 0.87 -1.0
321,356 - RPSI07_RS01160 0.87 +0.9
321,356 - RPSI07_RS01160 0.87 +0.0
321,356 - RPSI07_RS01160 0.87 +0.9
321,356 - RPSI07_RS01160 0.87 +0.9
321,356 - RPSI07_RS01160 0.87 -1.1
321,357 - RPSI07_RS01160 0.87 -0.1
321,400 + RPSI07_RS01160 0.89 +0.8
321,400 + RPSI07_RS01160 0.89 +0.0
321,453 - -2.1
321,719 + +0.6
321,720 - -0.1
321,720 - -0.5
321,803 + -1.4
321,804 - -0.2
321,804 - +0.9
321,804 - +0.9
321,831 + -0.5
321,832 - +1.9
321,841 + -1.0
321,841 + -2.3
321,841 + +0.7
321,841 + -1.8
321,841 + -1.1
321,841 + -1.4
321,841 + -0.5
321,841 + +0.3
321,842 - -0.9
321,842 - +0.9
321,842 - -0.1
321,842 - -0.2
321,842 - +0.9
321,842 - -1.4
321,842 - -0.7
321,842 - -2.1
321,842 - -0.7
321,842 - -0.7
322,138 + RPSI07_RS01165 0.55 -0.6
322,138 + RPSI07_RS01165 0.55 -0.1
322,138 + RPSI07_RS01165 0.55 -0.5
322,138 + RPSI07_RS01165 0.55 -0.5
322,138 + RPSI07_RS01165 0.55 +1.3
322,138 + RPSI07_RS01165 0.55 -1.4
322,139 - RPSI07_RS01165 0.55 +1.9
322,139 - RPSI07_RS01165 0.55 +0.9
322,139 - RPSI07_RS01165 0.55 -0.6
322,139 - RPSI07_RS01165 0.55 +1.9
322,139 - RPSI07_RS01165 0.55 +0.3
322,139 - RPSI07_RS01165 0.55 -1.7
322,139 - RPSI07_RS01165 0.55 -1.0
322,154 + RPSI07_RS01165 0.59 -0.4
322,154 + RPSI07_RS01165 0.59 -0.4
322,155 - RPSI07_RS01165 0.59 +0.0
322,155 - RPSI07_RS01165 0.59 -0.8
322,155 - RPSI07_RS01165 0.59 -0.7
322,155 - RPSI07_RS01165 0.59 -1.3
322,155 - RPSI07_RS01165 0.59 +2.9
322,155 - RPSI07_RS01165 0.59 +1.2
322,155 - RPSI07_RS01165 0.59 -0.1
322,234 + RPSI07_RS01165 0.79 -1.0
322,234 + RPSI07_RS01165 0.79 -1.0
322,242 + RPSI07_RS01165 0.80 -1.0
322,318 + +0.7
322,331 + -1.1
322,331 + +1.9
322,331 + -0.1
322,416 + +2.4
322,416 + +0.6
322,423 + -2.0
322,423 + +0.9
322,423 + +0.7
322,423 + +2.4
322,424 - -0.3
322,424 - -0.0
322,424 - -0.0
322,467 + -1.3
322,467 + +2.1
322,467 + +2.4
322,467 + +0.3
322,467 + -0.3
322,467 + +1.6
322,468 - -0.4
322,468 - +0.9
322,468 - +0.6
322,468 - +0.7
322,627 - RPSI07_RS01170 0.13 +3.4
322,627 - RPSI07_RS01170 0.13 +1.0
322,696 + RPSI07_RS01170 0.19 -1.0
322,696 + RPSI07_RS01170 0.19 +2.9
322,697 - RPSI07_RS01170 0.19 +2.9
322,697 - RPSI07_RS01170 0.19 +1.4
322,714 + RPSI07_RS01170 0.21 -1.5
322,714 + RPSI07_RS01170 0.21 +0.9
322,715 - RPSI07_RS01170 0.21 +1.7
322,715 - RPSI07_RS01170 0.21 -0.4
322,715 - RPSI07_RS01170 0.21 +0.9
322,715 - RPSI07_RS01170 0.21 +0.6
322,715 - RPSI07_RS01170 0.21 -0.8
322,715 - RPSI07_RS01170 0.21 -0.6
322,897 + RPSI07_RS01170 0.36 +0.9
322,952 + RPSI07_RS01170 0.41 +0.7
322,953 - RPSI07_RS01170 0.41 +1.5
322,996 + RPSI07_RS01170 0.45 +0.2
322,996 + RPSI07_RS01170 0.45 -1.5
322,996 + RPSI07_RS01170 0.45 -0.8
322,996 + RPSI07_RS01170 0.45 -0.8
322,997 - RPSI07_RS01170 0.45 -0.1
322,997 - RPSI07_RS01170 0.45 -0.8
322,997 - RPSI07_RS01170 0.45 +0.3
322,997 - RPSI07_RS01170 0.45 -2.6
323,011 + RPSI07_RS01170 0.46 -0.8
323,011 + RPSI07_RS01170 0.46 +0.2
323,012 - RPSI07_RS01170 0.46 -1.5
323,012 - RPSI07_RS01170 0.46 -0.4
323,068 + RPSI07_RS01170 0.51 -0.9
323,068 + RPSI07_RS01170 0.51 -1.0
323,068 + RPSI07_RS01170 0.51 -0.0
323,069 - RPSI07_RS01170 0.51 +1.9
323,069 - RPSI07_RS01170 0.51 +0.9
323,069 - RPSI07_RS01170 0.51 +0.8
323,069 - RPSI07_RS01170 0.51 -0.8
323,257 + RPSI07_RS01170 0.67 +0.2
323,257 + RPSI07_RS01170 0.67 -2.0
323,257 + RPSI07_RS01170 0.67 -1.0
323,258 - RPSI07_RS01170 0.67 +0.1
323,320 + RPSI07_RS01170 0.72 -0.0
323,320 + RPSI07_RS01170 0.72 -0.6
323,320 + RPSI07_RS01170 0.72 +0.1
323,320 + RPSI07_RS01170 0.72 +0.3

Or see this region's nucleotide sequence