Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29410

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29400 and ABID97_RS29405 are separated by 250 nucleotidesABID97_RS29405 and ABID97_RS29410 are separated by 62 nucleotidesABID97_RS29410 and ABID97_RS29415 are separated by 23 nucleotidesABID97_RS29415 and ABID97_RS29420 are separated by 85 nucleotides ABID97_RS29400: ABID97_RS29400 - acyl-CoA dehydrogenase family protein, at 804,751 to 805,986 _RS29400 ABID97_RS29405: ABID97_RS29405 - hypothetical protein, at 806,237 to 806,647 _RS29405 ABID97_RS29410: ABID97_RS29410 - hypothetical protein, at 806,710 to 807,063 _RS29410 ABID97_RS29415: ABID97_RS29415 - carboxymuconolactone decarboxylase family protein, at 807,087 to 807,752 _RS29415 ABID97_RS29420: ABID97_RS29420 - cupin domain-containing protein, at 807,838 to 808,281 _RS29420 Position (kb) 806 807 808Strain fitness (log2 ratio) -1 0 1 2at 806.046 kb on + strandat 806.135 kb on + strandat 806.136 kb on - strandat 806.576 kb on + strand, within ABID97_RS29405at 806.747 kb on - strand, within ABID97_RS29410at 807.580 kb on + strand, within ABID97_RS29415at 807.580 kb on + strand, within ABID97_RS29415at 807.581 kb on - strand, within ABID97_RS29415at 807.855 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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806,046 + +2.1
806,135 + +0.5
806,136 - +0.9
806,576 + ABID97_RS29405 0.82 +0.4
806,747 - ABID97_RS29410 0.10 -1.1
807,580 + ABID97_RS29415 0.74 -1.4
807,580 + ABID97_RS29415 0.74 -0.2
807,581 - ABID97_RS29415 0.74 -0.2
807,855 - -0.5

Or see this region's nucleotide sequence