Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28245

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28230 and ABID97_RS28235 are separated by 1 nucleotidesABID97_RS28235 and ABID97_RS28240 are separated by 17 nucleotidesABID97_RS28240 and ABID97_RS28245 are separated by 22 nucleotidesABID97_RS28245 and ABID97_RS28250 overlap by 4 nucleotides ABID97_RS28230: ABID97_RS28230 - lipid-transfer protein, at 566,847 to 568,040 _RS28230 ABID97_RS28235: ABID97_RS28235 - MaoC family dehydratase N-terminal domain-containing protein, at 568,042 to 568,485 _RS28235 ABID97_RS28240: ABID97_RS28240 - MaoC family dehydratase, at 568,503 to 568,931 _RS28240 ABID97_RS28245: ABID97_RS28245 - SDR family NAD(P)-dependent oxidoreductase, at 568,954 to 569,796 _RS28245 ABID97_RS28250: ABID97_RS28250 - acyl-CoA dehydrogenase family protein, at 569,793 to 570,959 _RS28250 Position (kb) 568 569 570Strain fitness (log2 ratio) -3 -2 -1 0 1at 569.441 kb on - strand, within ABID97_RS28245at 569.527 kb on + strand, within ABID97_RS28245at 569.753 kb on - strandat 569.753 kb on - strandat 569.753 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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569,441 - ABID97_RS28245 0.58 -2.8
569,527 + ABID97_RS28245 0.68 +0.1
569,753 - -0.6
569,753 - -0.3
569,753 - +0.0

Or see this region's nucleotide sequence