Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27665

Experiment: V2_10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS27660 and ABID97_RS27665 are separated by 61 nucleotidesABID97_RS27665 and ABID97_RS27670 are separated by 382 nucleotides ABID97_RS27660: ABID97_RS27660 - LysR family transcriptional regulator, at 450,941 to 451,924 _RS27660 ABID97_RS27665: ABID97_RS27665 - LysR family transcriptional regulator, at 451,986 to 452,882 _RS27665 ABID97_RS27670: ABID97_RS27670 - glycerate kinase, at 453,265 to 454,569 _RS27670 Position (kb) 451 452 453Strain fitness (log2 ratio) -1 0 1at 451.550 kb on + strand, within ABID97_RS27660at 451.609 kb on + strand, within ABID97_RS27660at 451.609 kb on + strand, within ABID97_RS27660at 451.922 kb on + strandat 452.421 kb on + strand, within ABID97_RS27665at 452.422 kb on - strand, within ABID97_RS27665at 452.478 kb on + strand, within ABID97_RS27665at 452.998 kb on + strandat 453.257 kb on + strandat 453.484 kb on + strand, within ABID97_RS27670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
remove
451,550 + ABID97_RS27660 0.62 -0.7
451,609 + ABID97_RS27660 0.68 -0.6
451,609 + ABID97_RS27660 0.68 -0.1
451,922 + +1.1
452,421 + ABID97_RS27665 0.48 +0.4
452,422 - ABID97_RS27665 0.49 -1.0
452,478 + ABID97_RS27665 0.55 -1.4
452,998 + +0.2
453,257 + +0.4
453,484 + ABID97_RS27670 0.17 +0.1

Or see this region's nucleotide sequence