Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27645 and ABID97_RS27650 are separated by 14 nucleotides ABID97_RS27650 and ABID97_RS27655 overlap by 4 nucleotides ABID97_RS27655 and ABID97_RS27660 are separated by 101 nucleotides
ABID97_RS27645: ABID97_RS27645 - RraA family protein, at 447,926 to 448,612
_RS27645
ABID97_RS27650: ABID97_RS27650 - tripartite tricarboxylate transporter substrate binding protein, at 448,627 to 449,613
_RS27650
ABID97_RS27655: ABID97_RS27655 - pyridoxal phosphate-dependent aminotransferase, at 449,610 to 450,839
_RS27655
ABID97_RS27660: ABID97_RS27660 - LysR family transcriptional regulator, at 450,941 to 451,924
_RS27660
Position (kb) 449
450
451 Strain fitness (log2 ratio) -1
0
1
2 at 449.049 kb on - strand, within ABID97_RS27650 at 449.222 kb on + strand, within ABID97_RS27650 at 449.222 kb on + strand, within ABID97_RS27650 at 449.231 kb on + strand, within ABID97_RS27650 at 449.231 kb on + strand, within ABID97_RS27650 at 449.232 kb on - strand, within ABID97_RS27650 at 450.298 kb on + strand, within ABID97_RS27655 at 450.929 kb on - strand at 451.550 kb on + strand, within ABID97_RS27660 at 451.609 kb on + strand, within ABID97_RS27660 at 451.609 kb on + strand, within ABID97_RS27660
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 449,049 - ABID97_RS27650 0.43 +0.3 449,222 + ABID97_RS27650 0.60 +2.1 449,222 + ABID97_RS27650 0.60 -0.3 449,231 + ABID97_RS27650 0.61 -0.2 449,231 + ABID97_RS27650 0.61 -0.9 449,232 - ABID97_RS27650 0.61 +0.2 450,298 + ABID97_RS27655 0.56 -1.5 450,929 - -0.5 451,550 + ABID97_RS27660 0.62 -0.7 451,609 + ABID97_RS27660 0.68 -0.6 451,609 + ABID97_RS27660 0.68 -0.1
Or see this region's nucleotide sequence