Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27405 and ABID97_RS27410 are separated by 3 nucleotides ABID97_RS27410 and ABID97_RS27415 are separated by 80 nucleotides ABID97_RS27415 and ABID97_RS27420 are separated by 44 nucleotides ABID97_RS27420 and ABID97_RS27425 are separated by 14 nucleotides
ABID97_RS27405: ABID97_RS27405 - amino acid ABC transporter permease, at 397,855 to 398,556
_RS27405
ABID97_RS27410: ABID97_RS27410 - amino acid ABC transporter permease, at 398,560 to 399,318
_RS27410
ABID97_RS27415: ABID97_RS27415 - amino acid ABC transporter ATP-binding protein, at 399,399 to 400,133
_RS27415
ABID97_RS27420: ABID97_RS27420 - ABC transporter substrate-binding protein, at 400,178 to 401,017
_RS27420
ABID97_RS27425: ABID97_RS27425 - tannase/feruloyl esterase family alpha/beta hydrolase, at 401,032 to 402,741
_RS27425
Position (kb) 399
400
401 Strain fitness (log2 ratio) -1
0
1 at 398.555 kb on - strand at 398.764 kb on + strand, within ABID97_RS27410 at 398.894 kb on - strand, within ABID97_RS27410 at 399.178 kb on + strand, within ABID97_RS27410 at 399.179 kb on - strand, within ABID97_RS27410 at 399.179 kb on - strand, within ABID97_RS27410 at 399.179 kb on - strand, within ABID97_RS27410 at 399.182 kb on - strand, within ABID97_RS27410 at 399.182 kb on - strand, within ABID97_RS27410 at 399.802 kb on - strand, within ABID97_RS27415 at 400.532 kb on + strand, within ABID97_RS27420 at 400.533 kb on - strand, within ABID97_RS27420 at 400.533 kb on - strand, within ABID97_RS27420 at 400.533 kb on - strand, within ABID97_RS27420 at 401.011 kb on - strand at 401.084 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 398,555 - +0.1 398,764 + ABID97_RS27410 0.27 +0.8 398,894 - ABID97_RS27410 0.44 -0.3 399,178 + ABID97_RS27410 0.81 -1.1 399,179 - ABID97_RS27410 0.82 +1.7 399,179 - ABID97_RS27410 0.82 +1.1 399,179 - ABID97_RS27410 0.82 -0.2 399,182 - ABID97_RS27410 0.82 +0.2 399,182 - ABID97_RS27410 0.82 +0.0 399,802 - ABID97_RS27415 0.55 -1.2 400,532 + ABID97_RS27420 0.42 +0.7 400,533 - ABID97_RS27420 0.42 -0.4 400,533 - ABID97_RS27420 0.42 -0.6 400,533 - ABID97_RS27420 0.42 +0.1 401,011 - -0.0 401,084 + -0.8
Or see this region's nucleotide sequence