Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27200 and ABID97_RS27205 are separated by 104 nucleotides ABID97_RS27205 and ABID97_RS27210 are separated by 16 nucleotides ABID97_RS27210 and ABID97_RS27215 are separated by 91 nucleotides ABID97_RS27215 and ABID97_RS27220 are separated by 63 nucleotides
ABID97_RS27200: ABID97_RS27200 - hypothetical protein, at 358,321 to 358,632
_RS27200
ABID97_RS27205: ABID97_RS27205 - hypothetical protein, at 358,737 to 358,961
_RS27205
ABID97_RS27210: ABID97_RS27210 - hypothetical protein, at 358,978 to 359,247
_RS27210
ABID97_RS27215: ABID97_RS27215 - NAD(+)--rifampin ADP-ribosyltransferase, at 359,339 to 359,734
_RS27215
ABID97_RS27220: ABID97_RS27220 - serine hydrolase domain-containing protein, at 359,798 to 361,687
_RS27220
Position (kb) 359
360 Strain fitness (log2 ratio) -2
-1
0
1 at 358.472 kb on + strand, within ABID97_RS27200 at 358.528 kb on + strand, within ABID97_RS27200 at 358.529 kb on - strand, within ABID97_RS27200 at 358.946 kb on - strand at 358.954 kb on - strand at 359.201 kb on - strand, within ABID97_RS27210 at 359.613 kb on - strand, within ABID97_RS27215 at 359.834 kb on + strand at 359.835 kb on - strand at 360.193 kb on - strand, within ABID97_RS27220 at 360.526 kb on - strand, within ABID97_RS27220 at 360.716 kb on - strand, within ABID97_RS27220
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 358,472 + ABID97_RS27200 0.48 +0.2 358,528 + ABID97_RS27200 0.66 +0.2 358,529 - ABID97_RS27200 0.67 -0.3 358,946 - -0.2 358,954 - +0.7 359,201 - ABID97_RS27210 0.83 -0.0 359,613 - ABID97_RS27215 0.69 -1.8 359,834 + +0.2 359,835 - +0.3 360,193 - ABID97_RS27220 0.21 +0.2 360,526 - ABID97_RS27220 0.39 -0.5 360,716 - ABID97_RS27220 0.49 -0.3
Or see this region's nucleotide sequence