Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27135 and ABID97_RS27140 are separated by 277 nucleotides ABID97_RS27140 and ABID97_RS27145 are separated by 350 nucleotides
ABID97_RS27135: ABID97_RS27135 - response regulator transcription factor, at 344,603 to 345,334
_RS27135
ABID97_RS27140: ABID97_RS27140 - winged helix-turn-helix domain-containing protein, at 345,612 to 346,367
_RS27140
ABID97_RS27145: ABID97_RS27145 - autotransporter outer membrane beta-barrel domain-containing protein, at 346,718 to 352,069
_RS27145
Position (kb) 345
346
347 Strain fitness (log2 ratio) -1
0
1 at 344.795 kb on + strand, within ABID97_RS27135 at 344.795 kb on + strand, within ABID97_RS27135 at 344.796 kb on - strand, within ABID97_RS27135 at 344.932 kb on - strand, within ABID97_RS27135 at 345.024 kb on + strand, within ABID97_RS27135 at 345.024 kb on + strand, within ABID97_RS27135 at 345.039 kb on + strand, within ABID97_RS27135 at 345.039 kb on + strand, within ABID97_RS27135 at 345.039 kb on + strand, within ABID97_RS27135 at 345.040 kb on - strand, within ABID97_RS27135 at 345.040 kb on - strand, within ABID97_RS27135 at 345.246 kb on + strand, within ABID97_RS27135 at 345.444 kb on + strand at 345.535 kb on + strand at 345.535 kb on + strand at 345.535 kb on + strand at 345.535 kb on + strand at 345.535 kb on + strand at 345.536 kb on - strand at 345.536 kb on - strand at 345.536 kb on - strand at 345.536 kb on - strand at 345.536 kb on - strand at 346.051 kb on - strand, within ABID97_RS27140 at 346.302 kb on + strand at 346.302 kb on + strand at 346.302 kb on + strand at 346.366 kb on - strand at 346.407 kb on + strand at 346.575 kb on - strand at 346.604 kb on + strand at 346.604 kb on + strand at 346.605 kb on - strand at 346.670 kb on + strand at 346.730 kb on + strand at 346.742 kb on + strand at 346.743 kb on - strand at 347.173 kb on + strand at 347.228 kb on + strand at 347.230 kb on + strand at 347.230 kb on + strand at 347.230 kb on + strand at 347.231 kb on - strand at 347.231 kb on - strand at 347.231 kb on - strand at 347.297 kb on - strand, within ABID97_RS27145
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 344,795 + ABID97_RS27135 0.26 -1.2 344,795 + ABID97_RS27135 0.26 -0.3 344,796 - ABID97_RS27135 0.26 -0.3 344,932 - ABID97_RS27135 0.45 +0.0 345,024 + ABID97_RS27135 0.58 +0.2 345,024 + ABID97_RS27135 0.58 -0.8 345,039 + ABID97_RS27135 0.60 -0.1 345,039 + ABID97_RS27135 0.60 -0.2 345,039 + ABID97_RS27135 0.60 +0.1 345,040 - ABID97_RS27135 0.60 -0.0 345,040 - ABID97_RS27135 0.60 -0.0 345,246 + ABID97_RS27135 0.88 +0.7 345,444 + +0.0 345,535 + +0.0 345,535 + +0.3 345,535 + +0.2 345,535 + -0.3 345,535 + +0.0 345,536 - -0.3 345,536 - -0.1 345,536 - +0.1 345,536 - +0.3 345,536 - +0.7 346,051 - ABID97_RS27140 0.58 -0.8 346,302 + +0.2 346,302 + +0.0 346,302 + -0.0 346,366 - +0.5 346,407 + +0.2 346,575 - +0.6 346,604 + -0.2 346,604 + +0.3 346,605 - -0.3 346,670 + +0.6 346,730 + -0.8 346,742 + -0.6 346,743 - -0.2 347,173 + -0.0 347,228 + -0.0 347,230 + -0.2 347,230 + -0.3 347,230 + +0.1 347,231 - +0.2 347,231 - -0.1 347,231 - -0.5 347,297 - ABID97_RS27145 0.11 +0.7
Or see this region's nucleotide sequence