Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26505 and ABID97_RS26510 are separated by 188 nucleotides ABID97_RS26510 and ABID97_RS26515 are separated by 203 nucleotides
ABID97_RS26505: ABID97_RS26505 - DUF899 domain-containing protein, at 219,178 to 219,960
_RS26505
ABID97_RS26510: ABID97_RS26510 - NUDIX hydrolase, at 220,149 to 220,598
_RS26510
ABID97_RS26515: ABID97_RS26515 - MFS transporter, at 220,802 to 222,061
_RS26515
Position (kb) 220
221 Strain fitness (log2 ratio) -2
-1
0
1 at 219.179 kb on + strand at 219.180 kb on - strand at 219.260 kb on + strand, within ABID97_RS26505 at 219.261 kb on - strand, within ABID97_RS26505 at 219.288 kb on - strand, within ABID97_RS26505 at 219.362 kb on + strand, within ABID97_RS26505 at 219.363 kb on - strand, within ABID97_RS26505 at 219.411 kb on - strand, within ABID97_RS26505 at 219.411 kb on - strand, within ABID97_RS26505 at 219.419 kb on + strand, within ABID97_RS26505 at 219.699 kb on - strand, within ABID97_RS26505 at 219.770 kb on + strand, within ABID97_RS26505 at 220.148 kb on + strand at 220.148 kb on + strand at 220.149 kb on - strand at 220.149 kb on - strand at 220.165 kb on - strand at 220.357 kb on - strand, within ABID97_RS26510 at 220.946 kb on + strand, within ABID97_RS26515 at 220.946 kb on + strand, within ABID97_RS26515 at 220.947 kb on - strand, within ABID97_RS26515
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 219,179 + +0.0 219,180 - +0.4 219,260 + ABID97_RS26505 0.10 +0.1 219,261 - ABID97_RS26505 0.11 -0.2 219,288 - ABID97_RS26505 0.14 -0.1 219,362 + ABID97_RS26505 0.23 -0.2 219,363 - ABID97_RS26505 0.24 -0.4 219,411 - ABID97_RS26505 0.30 +0.2 219,411 - ABID97_RS26505 0.30 -0.7 219,419 + ABID97_RS26505 0.31 -0.6 219,699 - ABID97_RS26505 0.67 +0.1 219,770 + ABID97_RS26505 0.76 +0.0 220,148 + +0.3 220,148 + +0.1 220,149 - +0.1 220,149 - +0.1 220,165 - -0.1 220,357 - ABID97_RS26510 0.46 -1.8 220,946 + ABID97_RS26515 0.11 -0.6 220,946 + ABID97_RS26515 0.11 +0.3 220,947 - ABID97_RS26515 0.12 -0.2
Or see this region's nucleotide sequence