Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26175 and ABID97_RS26180 are separated by 261 nucleotides ABID97_RS26180 and ABID97_RS26185 are separated by 86 nucleotides ABID97_RS26185 and ABID97_RS26190 are separated by 127 nucleotides ABID97_RS26190 and ABID97_RS26195 overlap by 1 nucleotides ABID97_RS26195 and ABID97_RS26200 are separated by 148 nucleotides
ABID97_RS26175: ABID97_RS26175 - phage protein NinX family protein, at 161,641 to 162,066
_RS26175
ABID97_RS26180: ABID97_RS26180 - hypothetical protein, at 162,328 to 162,543
_RS26180
ABID97_RS26185: ABID97_RS26185 - SDR family NAD(P)-dependent oxidoreductase, at 162,630 to 162,773
_RS26185
ABID97_RS26190: ABID97_RS26190 - type II toxin-antitoxin system HipA family toxin, at 162,901 to 164,223
_RS26190
ABID97_RS26195: ABID97_RS26195 - helix-turn-helix domain-containing protein, at 164,223 to 164,606
_RS26195
ABID97_RS26200: ABID97_RS26200 - (2Fe-2S)-binding protein, at 164,755 to 165,213
_RS26200
Position (kb) 162
163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2 at 161.993 kb on - strand, within ABID97_RS26175 at 162.052 kb on - strand at 162.065 kb on - strand at 162.221 kb on + strand at 162.222 kb on - strand at 162.528 kb on + strand at 162.529 kb on - strand at 162.542 kb on - strand at 163.130 kb on + strand, within ABID97_RS26190 at 163.208 kb on + strand, within ABID97_RS26190 at 163.232 kb on + strand, within ABID97_RS26190 at 163.232 kb on + strand, within ABID97_RS26190 at 163.233 kb on - strand, within ABID97_RS26190 at 163.424 kb on + strand, within ABID97_RS26190 at 163.424 kb on + strand, within ABID97_RS26190 at 163.425 kb on - strand, within ABID97_RS26190 at 163.425 kb on - strand, within ABID97_RS26190 at 164.045 kb on + strand, within ABID97_RS26190 at 164.045 kb on + strand, within ABID97_RS26190 at 164.046 kb on - strand, within ABID97_RS26190 at 164.046 kb on - strand, within ABID97_RS26190 at 164.681 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 161,993 - ABID97_RS26175 0.83 +0.2 162,052 - +0.4 162,065 - -0.3 162,221 + +0.2 162,222 - -1.9 162,528 + +0.8 162,529 - +0.1 162,542 - -1.2 163,130 + ABID97_RS26190 0.17 -0.8 163,208 + ABID97_RS26190 0.23 +0.3 163,232 + ABID97_RS26190 0.25 +0.4 163,232 + ABID97_RS26190 0.25 -0.1 163,233 - ABID97_RS26190 0.25 -0.6 163,424 + ABID97_RS26190 0.40 -0.2 163,424 + ABID97_RS26190 0.40 +0.5 163,425 - ABID97_RS26190 0.40 +2.3 163,425 - ABID97_RS26190 0.40 +0.2 164,045 + ABID97_RS26190 0.86 -1.0 164,045 + ABID97_RS26190 0.86 -0.2 164,046 - ABID97_RS26190 0.87 +1.0 164,046 - ABID97_RS26190 0.87 +1.0 164,681 + +0.5
Or see this region's nucleotide sequence