Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25805 and ABID97_RS25810 are separated by 51 nucleotides ABID97_RS25810 and ABID97_RS25815 are separated by 245 nucleotides ABID97_RS25815 and ABID97_RS25820 are separated by 18 nucleotides
ABID97_RS25805: ABID97_RS25805 - alpha/beta hydrolase fold domain-containing protein, at 81,981 to 82,802
_RS25805
ABID97_RS25810: ABID97_RS25810 - MarR family transcriptional regulator, at 82,854 to 83,270
_RS25810
ABID97_RS25815: ABID97_RS25815 - tripartite tricarboxylate transporter TctB family protein, at 83,516 to 84,004
_RS25815
ABID97_RS25820: ABID97_RS25820 - tripartite tricarboxylate transporter permease, at 84,023 to 85,537
_RS25820
Position (kb) 83
84
85 Strain fitness (log2 ratio) -1
0
1 at 83.141 kb on - strand, within ABID97_RS25810 at 83.337 kb on + strand at 83.337 kb on + strand at 83.358 kb on - strand at 83.516 kb on - strand at 83.516 kb on - strand at 83.600 kb on + strand, within ABID97_RS25815 at 83.601 kb on - strand, within ABID97_RS25815 at 83.601 kb on - strand, within ABID97_RS25815 at 84.087 kb on - strand at 84.179 kb on + strand, within ABID97_RS25820 at 84.179 kb on + strand, within ABID97_RS25820 at 84.180 kb on - strand, within ABID97_RS25820 at 84.461 kb on + strand, within ABID97_RS25820 at 84.462 kb on - strand, within ABID97_RS25820 at 84.599 kb on + strand, within ABID97_RS25820 at 84.999 kb on + strand, within ABID97_RS25820
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 83,141 - ABID97_RS25810 0.69 +0.5 83,337 + +0.2 83,337 + -0.0 83,358 - -0.0 83,516 - -1.2 83,516 - +0.2 83,600 + ABID97_RS25815 0.17 +1.1 83,601 - ABID97_RS25815 0.17 +0.5 83,601 - ABID97_RS25815 0.17 +0.2 84,087 - -0.5 84,179 + ABID97_RS25820 0.10 +0.2 84,179 + ABID97_RS25820 0.10 +0.1 84,180 - ABID97_RS25820 0.10 -0.3 84,461 + ABID97_RS25820 0.29 +0.1 84,462 - ABID97_RS25820 0.29 -0.3 84,599 + ABID97_RS25820 0.38 +0.8 84,999 + ABID97_RS25820 0.64 -0.8
Or see this region's nucleotide sequence