Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25100 and ABID97_RS25105 are separated by 116 nucleotides ABID97_RS25105 and ABID97_RS25110 are separated by 110 nucleotides ABID97_RS25110 and ABID97_RS25115 are separated by 13 nucleotides
ABID97_RS25100: ABID97_RS25100 - hydroxymethylglutaryl-CoA lyase, at 5,199,121 to 5,200,041
_RS25100
ABID97_RS25105: ABID97_RS25105 - glyoxylate/hydroxypyruvate reductase A, at 5,200,158 to 5,201,078
_RS25105
ABID97_RS25110: ABID97_RS25110 - EthD family reductase, at 5,201,189 to 5,201,503
_RS25110
ABID97_RS25115: ABID97_RS25115 - acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha, at 5,201,517 to 5,203,517
_RS25115
Position (kb) 5200
5201
5202 Strain fitness (log2 ratio) -1
0
1
2
3 at 5199.194 kb on + strand at 5199.260 kb on + strand, within ABID97_RS25100 at 5199.260 kb on + strand, within ABID97_RS25100 at 5199.260 kb on + strand, within ABID97_RS25100 at 5199.260 kb on + strand, within ABID97_RS25100 at 5199.261 kb on - strand, within ABID97_RS25100 at 5199.261 kb on - strand, within ABID97_RS25100 at 5199.261 kb on - strand, within ABID97_RS25100 at 5199.407 kb on + strand, within ABID97_RS25100 at 5199.408 kb on - strand, within ABID97_RS25100 at 5199.408 kb on - strand, within ABID97_RS25100 at 5200.058 kb on + strand at 5200.058 kb on + strand at 5200.058 kb on + strand at 5200.058 kb on + strand at 5200.059 kb on - strand at 5200.059 kb on - strand at 5200.059 kb on - strand at 5200.059 kb on - strand at 5200.059 kb on - strand at 5200.332 kb on + strand, within ABID97_RS25105 at 5200.332 kb on + strand, within ABID97_RS25105 at 5200.333 kb on - strand, within ABID97_RS25105 at 5200.333 kb on - strand, within ABID97_RS25105 at 5200.333 kb on - strand, within ABID97_RS25105 at 5200.436 kb on - strand, within ABID97_RS25105 at 5200.714 kb on + strand, within ABID97_RS25105 at 5200.715 kb on - strand, within ABID97_RS25105 at 5200.715 kb on - strand, within ABID97_RS25105 at 5200.747 kb on + strand, within ABID97_RS25105 at 5200.792 kb on + strand, within ABID97_RS25105 at 5200.793 kb on - strand, within ABID97_RS25105 at 5201.090 kb on + strand at 5201.093 kb on + strand at 5201.132 kb on - strand at 5201.140 kb on + strand at 5201.140 kb on + strand at 5201.140 kb on + strand at 5201.141 kb on - strand at 5201.141 kb on - strand at 5201.210 kb on + strand at 5201.210 kb on + strand at 5201.210 kb on + strand at 5201.211 kb on - strand at 5201.211 kb on - strand at 5201.216 kb on + strand at 5201.306 kb on + strand, within ABID97_RS25110 at 5201.306 kb on + strand, within ABID97_RS25110 at 5201.306 kb on + strand, within ABID97_RS25110 at 5201.307 kb on - strand, within ABID97_RS25110 at 5201.357 kb on + strand, within ABID97_RS25110 at 5201.357 kb on + strand, within ABID97_RS25110 at 5201.357 kb on + strand, within ABID97_RS25110 at 5201.358 kb on - strand, within ABID97_RS25110 at 5201.358 kb on - strand, within ABID97_RS25110 at 5201.358 kb on - strand, within ABID97_RS25110 at 5201.453 kb on + strand, within ABID97_RS25110 at 5201.453 kb on + strand, within ABID97_RS25110 at 5201.454 kb on - strand, within ABID97_RS25110 at 5201.454 kb on - strand, within ABID97_RS25110 at 5201.959 kb on + strand, within ABID97_RS25115 at 5201.960 kb on - strand, within ABID97_RS25115
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 5,199,194 + +0.9 5,199,260 + ABID97_RS25100 0.15 -1.4 5,199,260 + ABID97_RS25100 0.15 +0.8 5,199,260 + ABID97_RS25100 0.15 +0.4 5,199,260 + ABID97_RS25100 0.15 +0.6 5,199,261 - ABID97_RS25100 0.15 +0.2 5,199,261 - ABID97_RS25100 0.15 +0.1 5,199,261 - ABID97_RS25100 0.15 +0.5 5,199,407 + ABID97_RS25100 0.31 +0.3 5,199,408 - ABID97_RS25100 0.31 +0.8 5,199,408 - ABID97_RS25100 0.31 +0.5 5,200,058 + -0.0 5,200,058 + -0.2 5,200,058 + -0.2 5,200,058 + +0.2 5,200,059 - -0.6 5,200,059 - +0.1 5,200,059 - +0.4 5,200,059 - +0.3 5,200,059 - +1.4 5,200,332 + ABID97_RS25105 0.19 +1.9 5,200,332 + ABID97_RS25105 0.19 -0.5 5,200,333 - ABID97_RS25105 0.19 +0.2 5,200,333 - ABID97_RS25105 0.19 -0.0 5,200,333 - ABID97_RS25105 0.19 +1.2 5,200,436 - ABID97_RS25105 0.30 +0.8 5,200,714 + ABID97_RS25105 0.60 +0.1 5,200,715 - ABID97_RS25105 0.60 -0.1 5,200,715 - ABID97_RS25105 0.60 +2.1 5,200,747 + ABID97_RS25105 0.64 -0.7 5,200,792 + ABID97_RS25105 0.69 +0.2 5,200,793 - ABID97_RS25105 0.69 -0.8 5,201,090 + -0.3 5,201,093 + +0.8 5,201,132 - -0.6 5,201,140 + -0.1 5,201,140 + +3.1 5,201,140 + +0.2 5,201,141 - -0.6 5,201,141 - +0.6 5,201,210 + -0.2 5,201,210 + +0.1 5,201,210 + +0.5 5,201,211 - -0.7 5,201,211 - +0.8 5,201,216 + -0.3 5,201,306 + ABID97_RS25110 0.37 -0.2 5,201,306 + ABID97_RS25110 0.37 -0.2 5,201,306 + ABID97_RS25110 0.37 -0.2 5,201,307 - ABID97_RS25110 0.37 -1.3 5,201,357 + ABID97_RS25110 0.53 -0.3 5,201,357 + ABID97_RS25110 0.53 -0.8 5,201,357 + ABID97_RS25110 0.53 -0.4 5,201,358 - ABID97_RS25110 0.54 -0.2 5,201,358 - ABID97_RS25110 0.54 +1.0 5,201,358 - ABID97_RS25110 0.54 +0.1 5,201,453 + ABID97_RS25110 0.84 -0.1 5,201,453 + ABID97_RS25110 0.84 -0.1 5,201,454 - ABID97_RS25110 0.84 +0.2 5,201,454 - ABID97_RS25110 0.84 -0.0 5,201,959 + ABID97_RS25115 0.22 +0.7 5,201,960 - ABID97_RS25115 0.22 +0.1
Or see this region's nucleotide sequence