Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24475 and ABID97_RS24480 are separated by 6 nucleotides ABID97_RS24480 and ABID97_RS24485 are separated by 209 nucleotides ABID97_RS24485 and ABID97_RS24490 overlap by 1 nucleotides ABID97_RS24490 and ABID97_RS24495 are separated by 74 nucleotides
ABID97_RS24475: ABID97_RS24475 - ADP-forming succinate--CoA ligase subunit beta, at 5,066,782 to 5,067,951
_RS24475
ABID97_RS24480: ABID97_RS24480 - hypothetical protein, at 5,067,958 to 5,068,287
_RS24480
ABID97_RS24485: ABID97_RS24485 - formyl-CoA transferase, at 5,068,497 to 5,069,744
_RS24485
ABID97_RS24490: ABID97_RS24490 - PAS domain S-box protein, at 5,069,744 to 5,070,181
_RS24490
ABID97_RS24495: ABID97_RS24495 - formyl-CoA transferase, at 5,070,256 to 5,071,527
_RS24495
Position (kb) 5068
5069
5070 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5067.945 kb on + strand at 5068.091 kb on + strand, within ABID97_RS24480 at 5068.178 kb on + strand, within ABID97_RS24480 at 5068.178 kb on + strand, within ABID97_RS24480 at 5068.179 kb on - strand, within ABID97_RS24480 at 5068.179 kb on - strand, within ABID97_RS24480 at 5068.217 kb on + strand, within ABID97_RS24480 at 5068.217 kb on + strand, within ABID97_RS24480 at 5068.217 kb on + strand, within ABID97_RS24480 at 5068.218 kb on - strand, within ABID97_RS24480 at 5068.232 kb on + strand, within ABID97_RS24480 at 5068.233 kb on - strand, within ABID97_RS24480 at 5068.263 kb on - strand at 5068.414 kb on + strand at 5068.478 kb on + strand at 5068.482 kb on + strand at 5068.483 kb on - strand at 5068.543 kb on + strand at 5068.543 kb on + strand at 5068.544 kb on - strand at 5068.544 kb on - strand at 5068.648 kb on + strand, within ABID97_RS24485 at 5068.648 kb on + strand, within ABID97_RS24485 at 5068.649 kb on - strand, within ABID97_RS24485 at 5068.756 kb on + strand, within ABID97_RS24485 at 5068.757 kb on - strand, within ABID97_RS24485 at 5068.864 kb on + strand, within ABID97_RS24485 at 5068.942 kb on + strand, within ABID97_RS24485 at 5068.942 kb on + strand, within ABID97_RS24485 at 5068.942 kb on + strand, within ABID97_RS24485 at 5068.943 kb on - strand, within ABID97_RS24485 at 5068.943 kb on - strand, within ABID97_RS24485 at 5068.943 kb on - strand, within ABID97_RS24485 at 5068.943 kb on - strand, within ABID97_RS24485 at 5068.943 kb on - strand, within ABID97_RS24485 at 5068.948 kb on + strand, within ABID97_RS24485 at 5068.949 kb on - strand, within ABID97_RS24485 at 5069.060 kb on - strand, within ABID97_RS24485 at 5069.069 kb on - strand, within ABID97_RS24485 at 5069.195 kb on - strand, within ABID97_RS24485 at 5069.333 kb on - strand, within ABID97_RS24485 at 5069.333 kb on - strand, within ABID97_RS24485 at 5069.333 kb on - strand, within ABID97_RS24485 at 5069.350 kb on + strand, within ABID97_RS24485 at 5069.351 kb on - strand, within ABID97_RS24485 at 5069.569 kb on + strand, within ABID97_RS24485 at 5069.569 kb on + strand, within ABID97_RS24485 at 5069.570 kb on - strand, within ABID97_RS24485 at 5069.570 kb on - strand, within ABID97_RS24485 at 5069.570 kb on - strand, within ABID97_RS24485 at 5069.952 kb on + strand, within ABID97_RS24490 at 5069.952 kb on + strand, within ABID97_RS24490 at 5069.952 kb on + strand, within ABID97_RS24490 at 5069.953 kb on - strand, within ABID97_RS24490 at 5069.986 kb on - strand, within ABID97_RS24490 at 5070.186 kb on - strand at 5070.186 kb on - strand at 5070.407 kb on + strand, within ABID97_RS24495 at 5070.408 kb on - strand, within ABID97_RS24495 at 5070.623 kb on + strand, within ABID97_RS24495 at 5070.623 kb on + strand, within ABID97_RS24495 at 5070.623 kb on + strand, within ABID97_RS24495 at 5070.701 kb on + strand, within ABID97_RS24495 at 5070.702 kb on - strand, within ABID97_RS24495 at 5070.702 kb on - strand, within ABID97_RS24495 at 5070.702 kb on - strand, within ABID97_RS24495 at 5070.707 kb on + strand, within ABID97_RS24495 at 5070.707 kb on + strand, within ABID97_RS24495
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 5,067,945 + +0.4 5,068,091 + ABID97_RS24480 0.40 -0.7 5,068,178 + ABID97_RS24480 0.67 +0.6 5,068,178 + ABID97_RS24480 0.67 -1.4 5,068,179 - ABID97_RS24480 0.67 +0.2 5,068,179 - ABID97_RS24480 0.67 -0.2 5,068,217 + ABID97_RS24480 0.78 -0.1 5,068,217 + ABID97_RS24480 0.78 -0.3 5,068,217 + ABID97_RS24480 0.78 +1.0 5,068,218 - ABID97_RS24480 0.79 -0.2 5,068,232 + ABID97_RS24480 0.83 -0.2 5,068,233 - ABID97_RS24480 0.83 +0.8 5,068,263 - +0.3 5,068,414 + -0.1 5,068,478 + +1.2 5,068,482 + -0.3 5,068,483 - -2.6 5,068,543 + +0.1 5,068,543 + +0.5 5,068,544 - -0.6 5,068,544 - -0.8 5,068,648 + ABID97_RS24485 0.12 -0.3 5,068,648 + ABID97_RS24485 0.12 -0.4 5,068,649 - ABID97_RS24485 0.12 +1.9 5,068,756 + ABID97_RS24485 0.21 -0.1 5,068,757 - ABID97_RS24485 0.21 -1.3 5,068,864 + ABID97_RS24485 0.29 -0.4 5,068,942 + ABID97_RS24485 0.36 -1.6 5,068,942 + ABID97_RS24485 0.36 -0.0 5,068,942 + ABID97_RS24485 0.36 -0.9 5,068,943 - ABID97_RS24485 0.36 -0.1 5,068,943 - ABID97_RS24485 0.36 -0.1 5,068,943 - ABID97_RS24485 0.36 -1.4 5,068,943 - ABID97_RS24485 0.36 -1.0 5,068,943 - ABID97_RS24485 0.36 +0.9 5,068,948 + ABID97_RS24485 0.36 -0.1 5,068,949 - ABID97_RS24485 0.36 -1.3 5,069,060 - ABID97_RS24485 0.45 -2.3 5,069,069 - ABID97_RS24485 0.46 -1.2 5,069,195 - ABID97_RS24485 0.56 -0.9 5,069,333 - ABID97_RS24485 0.67 -0.6 5,069,333 - ABID97_RS24485 0.67 -0.4 5,069,333 - ABID97_RS24485 0.67 -1.9 5,069,350 + ABID97_RS24485 0.68 -0.1 5,069,351 - ABID97_RS24485 0.68 -2.8 5,069,569 + ABID97_RS24485 0.86 -3.0 5,069,569 + ABID97_RS24485 0.86 -0.0 5,069,570 - ABID97_RS24485 0.86 -0.7 5,069,570 - ABID97_RS24485 0.86 -0.2 5,069,570 - ABID97_RS24485 0.86 -1.0 5,069,952 + ABID97_RS24490 0.47 -0.5 5,069,952 + ABID97_RS24490 0.47 -0.2 5,069,952 + ABID97_RS24490 0.47 -0.2 5,069,953 - ABID97_RS24490 0.48 -1.0 5,069,986 - ABID97_RS24490 0.55 +0.9 5,070,186 - -1.3 5,070,186 - +0.3 5,070,407 + ABID97_RS24495 0.12 -0.8 5,070,408 - ABID97_RS24495 0.12 +0.9 5,070,623 + ABID97_RS24495 0.29 +0.3 5,070,623 + ABID97_RS24495 0.29 +1.2 5,070,623 + ABID97_RS24495 0.29 +0.7 5,070,701 + ABID97_RS24495 0.35 +0.4 5,070,702 - ABID97_RS24495 0.35 -0.5 5,070,702 - ABID97_RS24495 0.35 +0.4 5,070,702 - ABID97_RS24495 0.35 -0.4 5,070,707 + ABID97_RS24495 0.35 -0.1 5,070,707 + ABID97_RS24495 0.35 -2.3
Or see this region's nucleotide sequence