Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22670 and ABID97_RS22675 are separated by 26 nucleotides ABID97_RS22675 and ABID97_RS22680 are separated by 21 nucleotides ABID97_RS22680 and ABID97_RS22685 are separated by 12 nucleotides
ABID97_RS22670: ABID97_RS22670 - SDR family oxidoreductase, at 4,696,070 to 4,696,864
_RS22670
ABID97_RS22675: ABID97_RS22675 - DMT family transporter, at 4,696,891 to 4,697,841
_RS22675
ABID97_RS22680: ABID97_RS22680 - gamma-glutamyltransferase family protein, at 4,697,863 to 4,699,476
_RS22680
ABID97_RS22685: ABID97_RS22685 - tripartite tricarboxylate transporter substrate binding protein, at 4,699,489 to 4,700,463
_RS22685
Position (kb) 4697
4698
4699
4700 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4697.270 kb on + strand, within ABID97_RS22675 at 4697.391 kb on - strand, within ABID97_RS22675 at 4697.439 kb on - strand, within ABID97_RS22675 at 4697.439 kb on - strand, within ABID97_RS22675 at 4697.513 kb on + strand, within ABID97_RS22675 at 4697.513 kb on + strand, within ABID97_RS22675 at 4697.513 kb on + strand, within ABID97_RS22675 at 4697.549 kb on + strand, within ABID97_RS22675 at 4697.550 kb on - strand, within ABID97_RS22675 at 4697.553 kb on - strand, within ABID97_RS22675 at 4697.705 kb on + strand, within ABID97_RS22675 at 4697.912 kb on + strand at 4697.913 kb on - strand at 4697.913 kb on - strand at 4697.972 kb on + strand at 4697.973 kb on - strand at 4698.119 kb on + strand, within ABID97_RS22680 at 4698.120 kb on - strand, within ABID97_RS22680 at 4698.359 kb on + strand, within ABID97_RS22680 at 4698.359 kb on + strand, within ABID97_RS22680 at 4698.360 kb on - strand, within ABID97_RS22680 at 4698.360 kb on - strand, within ABID97_RS22680 at 4698.360 kb on - strand, within ABID97_RS22680 at 4698.413 kb on + strand, within ABID97_RS22680 at 4698.414 kb on - strand, within ABID97_RS22680 at 4698.497 kb on + strand, within ABID97_RS22680 at 4698.498 kb on - strand, within ABID97_RS22680 at 4698.555 kb on - strand, within ABID97_RS22680 at 4698.555 kb on - strand, within ABID97_RS22680 at 4698.560 kb on + strand at 4698.762 kb on - strand, within ABID97_RS22680 at 4698.842 kb on + strand, within ABID97_RS22680 at 4698.842 kb on + strand, within ABID97_RS22680 at 4698.842 kb on + strand, within ABID97_RS22680 at 4698.843 kb on - strand, within ABID97_RS22680 at 4698.845 kb on + strand, within ABID97_RS22680 at 4698.845 kb on + strand, within ABID97_RS22680 at 4698.846 kb on - strand, within ABID97_RS22680 at 4698.846 kb on - strand, within ABID97_RS22680 at 4699.178 kb on + strand, within ABID97_RS22680 at 4699.179 kb on - strand, within ABID97_RS22680 at 4699.193 kb on + strand, within ABID97_RS22680 at 4699.193 kb on + strand, within ABID97_RS22680 at 4699.194 kb on - strand at 4699.452 kb on - strand at 4699.700 kb on + strand, within ABID97_RS22685 at 4699.701 kb on - strand, within ABID97_RS22685 at 4699.701 kb on - strand, within ABID97_RS22685 at 4699.701 kb on - strand, within ABID97_RS22685 at 4699.910 kb on + strand, within ABID97_RS22685 at 4699.997 kb on + strand, within ABID97_RS22685 at 4699.997 kb on + strand, within ABID97_RS22685 at 4699.998 kb on - strand, within ABID97_RS22685 at 4700.136 kb on - strand, within ABID97_RS22685
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 4,697,270 + ABID97_RS22675 0.40 +0.3 4,697,391 - ABID97_RS22675 0.53 +0.0 4,697,439 - ABID97_RS22675 0.58 +0.2 4,697,439 - ABID97_RS22675 0.58 -0.5 4,697,513 + ABID97_RS22675 0.65 -0.2 4,697,513 + ABID97_RS22675 0.65 +0.2 4,697,513 + ABID97_RS22675 0.65 -1.1 4,697,549 + ABID97_RS22675 0.69 +0.2 4,697,550 - ABID97_RS22675 0.69 +1.3 4,697,553 - ABID97_RS22675 0.70 +0.4 4,697,705 + ABID97_RS22675 0.86 -1.9 4,697,912 + -0.7 4,697,913 - -0.4 4,697,913 - +0.1 4,697,972 + +0.7 4,697,973 - +0.3 4,698,119 + ABID97_RS22680 0.16 -0.9 4,698,120 - ABID97_RS22680 0.16 -0.6 4,698,359 + ABID97_RS22680 0.31 -0.8 4,698,359 + ABID97_RS22680 0.31 -0.4 4,698,360 - ABID97_RS22680 0.31 -0.5 4,698,360 - ABID97_RS22680 0.31 -0.6 4,698,360 - ABID97_RS22680 0.31 +0.9 4,698,413 + ABID97_RS22680 0.34 -0.1 4,698,414 - ABID97_RS22680 0.34 +1.1 4,698,497 + ABID97_RS22680 0.39 -0.6 4,698,498 - ABID97_RS22680 0.39 +0.5 4,698,555 - ABID97_RS22680 0.43 -0.2 4,698,555 - ABID97_RS22680 0.43 -0.5 4,698,560 + +1.9 4,698,762 - ABID97_RS22680 0.56 -0.3 4,698,842 + ABID97_RS22680 0.61 -0.6 4,698,842 + ABID97_RS22680 0.61 -0.7 4,698,842 + ABID97_RS22680 0.61 -0.8 4,698,843 - ABID97_RS22680 0.61 -0.0 4,698,845 + ABID97_RS22680 0.61 +0.1 4,698,845 + ABID97_RS22680 0.61 -1.3 4,698,846 - ABID97_RS22680 0.61 -0.0 4,698,846 - ABID97_RS22680 0.61 +0.7 4,699,178 + ABID97_RS22680 0.81 +0.7 4,699,179 - ABID97_RS22680 0.82 +0.0 4,699,193 + ABID97_RS22680 0.82 -0.0 4,699,193 + ABID97_RS22680 0.82 -0.7 4,699,194 - +0.9 4,699,452 - -0.7 4,699,700 + ABID97_RS22685 0.22 +0.2 4,699,701 - ABID97_RS22685 0.22 +0.1 4,699,701 - ABID97_RS22685 0.22 -0.2 4,699,701 - ABID97_RS22685 0.22 -0.9 4,699,910 + ABID97_RS22685 0.43 -0.3 4,699,997 + ABID97_RS22685 0.52 +0.4 4,699,997 + ABID97_RS22685 0.52 +0.5 4,699,998 - ABID97_RS22685 0.52 +0.3 4,700,136 - ABID97_RS22685 0.66 +0.1
Or see this region's nucleotide sequence