Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22440 and ABID97_RS22445 are separated by 118 nucleotides ABID97_RS22445 and ABID97_RS22450 are separated by 103 nucleotides ABID97_RS22450 and ABID97_RS22455 are separated by 8 nucleotides
ABID97_RS22440: ABID97_RS22440 - DUF1161 domain-containing protein, at 4,649,041 to 4,649,373
_RS22440
ABID97_RS22445: ABID97_RS22445 - sel1 repeat family protein, at 4,649,492 to 4,649,911
_RS22445
ABID97_RS22450: ABID97_RS22450 - YbdD/YjiX family protein, at 4,650,015 to 4,650,221
_RS22450
ABID97_RS22455: ABID97_RS22455 - carbon starvation CstA family protein, at 4,650,230 to 4,652,296
_RS22455
Position (kb)
4650
4651 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4649.042 kb on + strand at 4649.168 kb on + strand, within ABID97_RS22440 at 4649.417 kb on - strand at 4649.737 kb on - strand, within ABID97_RS22445 at 4650.079 kb on + strand, within ABID97_RS22450 at 4650.079 kb on + strand, within ABID97_RS22450 at 4650.079 kb on + strand, within ABID97_RS22450 at 4650.079 kb on + strand, within ABID97_RS22450 at 4650.080 kb on - strand, within ABID97_RS22450 at 4650.080 kb on - strand, within ABID97_RS22450 at 4650.127 kb on + strand, within ABID97_RS22450 at 4650.325 kb on - strand at 4650.325 kb on - strand at 4650.721 kb on - strand, within ABID97_RS22455 at 4650.721 kb on - strand, within ABID97_RS22455 at 4650.898 kb on - strand, within ABID97_RS22455 at 4651.128 kb on + strand, within ABID97_RS22455 at 4651.128 kb on + strand, within ABID97_RS22455 at 4651.128 kb on + strand, within ABID97_RS22455 at 4651.129 kb on + strand, within ABID97_RS22455
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 4,649,042 + -0.0 4,649,168 + ABID97_RS22440 0.38 +0.5 4,649,417 - +1.9 4,649,737 - ABID97_RS22445 0.58 -1.3 4,650,079 + ABID97_RS22450 0.31 +0.2 4,650,079 + ABID97_RS22450 0.31 -0.6 4,650,079 + ABID97_RS22450 0.31 -1.5 4,650,079 + ABID97_RS22450 0.31 -0.3 4,650,080 - ABID97_RS22450 0.31 -0.9 4,650,080 - ABID97_RS22450 0.31 -1.0 4,650,127 + ABID97_RS22450 0.54 -0.3 4,650,325 - -0.7 4,650,325 - -1.1 4,650,721 - ABID97_RS22455 0.24 -0.9 4,650,721 - ABID97_RS22455 0.24 -1.9 4,650,898 - ABID97_RS22455 0.32 -0.6 4,651,128 + ABID97_RS22455 0.43 -0.6 4,651,128 + ABID97_RS22455 0.43 -0.9 4,651,128 + ABID97_RS22455 0.43 -0.9 4,651,129 + ABID97_RS22455 0.43 -0.6
Or see this region's nucleotide sequence