Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22450

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22440 and ABID97_RS22445 are separated by 118 nucleotidesABID97_RS22445 and ABID97_RS22450 are separated by 103 nucleotidesABID97_RS22450 and ABID97_RS22455 are separated by 8 nucleotides ABID97_RS22440: ABID97_RS22440 - DUF1161 domain-containing protein, at 4,649,041 to 4,649,373 _RS22440 ABID97_RS22445: ABID97_RS22445 - sel1 repeat family protein, at 4,649,492 to 4,649,911 _RS22445 ABID97_RS22450: ABID97_RS22450 - YbdD/YjiX family protein, at 4,650,015 to 4,650,221 _RS22450 ABID97_RS22455: ABID97_RS22455 - carbon starvation CstA family protein, at 4,650,230 to 4,652,296 _RS22455 Position (kb) 4650 4651Strain fitness (log2 ratio) -2 -1 0 1 2at 4649.042 kb on + strandat 4649.168 kb on + strand, within ABID97_RS22440at 4649.417 kb on - strandat 4649.737 kb on - strand, within ABID97_RS22445at 4650.079 kb on + strand, within ABID97_RS22450at 4650.079 kb on + strand, within ABID97_RS22450at 4650.079 kb on + strand, within ABID97_RS22450at 4650.079 kb on + strand, within ABID97_RS22450at 4650.080 kb on - strand, within ABID97_RS22450at 4650.080 kb on - strand, within ABID97_RS22450at 4650.127 kb on + strand, within ABID97_RS22450at 4650.325 kb on - strandat 4650.325 kb on - strandat 4650.721 kb on - strand, within ABID97_RS22455at 4650.721 kb on - strand, within ABID97_RS22455at 4650.898 kb on - strand, within ABID97_RS22455at 4651.128 kb on + strand, within ABID97_RS22455at 4651.128 kb on + strand, within ABID97_RS22455at 4651.128 kb on + strand, within ABID97_RS22455at 4651.129 kb on + strand, within ABID97_RS22455

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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4,649,042 + -0.0
4,649,168 + ABID97_RS22440 0.38 +0.5
4,649,417 - +1.9
4,649,737 - ABID97_RS22445 0.58 -1.3
4,650,079 + ABID97_RS22450 0.31 +0.2
4,650,079 + ABID97_RS22450 0.31 -0.6
4,650,079 + ABID97_RS22450 0.31 -1.5
4,650,079 + ABID97_RS22450 0.31 -0.3
4,650,080 - ABID97_RS22450 0.31 -0.9
4,650,080 - ABID97_RS22450 0.31 -1.0
4,650,127 + ABID97_RS22450 0.54 -0.3
4,650,325 - -0.7
4,650,325 - -1.1
4,650,721 - ABID97_RS22455 0.24 -0.9
4,650,721 - ABID97_RS22455 0.24 -1.9
4,650,898 - ABID97_RS22455 0.32 -0.6
4,651,128 + ABID97_RS22455 0.43 -0.6
4,651,128 + ABID97_RS22455 0.43 -0.9
4,651,128 + ABID97_RS22455 0.43 -0.9
4,651,129 + ABID97_RS22455 0.43 -0.6

Or see this region's nucleotide sequence