Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22430 and ABID97_RS22435 are separated by 20 nucleotides ABID97_RS22435 and ABID97_RS22440 are separated by 43 nucleotides ABID97_RS22440 and ABID97_RS22445 are separated by 118 nucleotides
ABID97_RS22430: ABID97_RS22430 - cystathionine beta-lyase, at 4,646,911 to 4,648,128
_RS22430
ABID97_RS22435: ABID97_RS22435 - alpha/beta fold hydrolase, at 4,648,149 to 4,648,997
_RS22435
ABID97_RS22440: ABID97_RS22440 - DUF1161 domain-containing protein, at 4,649,041 to 4,649,373
_RS22440
ABID97_RS22445: ABID97_RS22445 - sel1 repeat family protein, at 4,649,492 to 4,649,911
_RS22445
Position (kb)
4648
4649 Strain fitness (log2 ratio)
-1
0
1
2 at 4647.431 kb on - strand, within ABID97_RS22430 at 4647.523 kb on + strand, within ABID97_RS22430 at 4647.575 kb on - strand, within ABID97_RS22430 at 4648.756 kb on + strand, within ABID97_RS22435 at 4648.757 kb on - strand, within ABID97_RS22435 at 4648.799 kb on - strand, within ABID97_RS22435 at 4648.799 kb on - strand, within ABID97_RS22435 at 4648.840 kb on + strand, within ABID97_RS22435 at 4648.840 kb on + strand, within ABID97_RS22435 at 4648.841 kb on - strand, within ABID97_RS22435 at 4649.042 kb on + strand at 4649.168 kb on + strand, within ABID97_RS22440 at 4649.417 kb on - strand at 4649.737 kb on - strand, within ABID97_RS22445
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 4,647,431 - ABID97_RS22430 0.43 -0.1 4,647,523 + ABID97_RS22430 0.50 +0.7 4,647,575 - ABID97_RS22430 0.55 -0.6 4,648,756 + ABID97_RS22435 0.71 +0.1 4,648,757 - ABID97_RS22435 0.72 +0.5 4,648,799 - ABID97_RS22435 0.77 -0.7 4,648,799 - ABID97_RS22435 0.77 -0.5 4,648,840 + ABID97_RS22435 0.81 -1.5 4,648,840 + ABID97_RS22435 0.81 -0.5 4,648,841 - ABID97_RS22435 0.82 -1.2 4,649,042 + -0.0 4,649,168 + ABID97_RS22440 0.38 +0.5 4,649,417 - +1.9 4,649,737 - ABID97_RS22445 0.58 -1.3
Or see this region's nucleotide sequence