Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22435

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22430 and ABID97_RS22435 are separated by 20 nucleotidesABID97_RS22435 and ABID97_RS22440 are separated by 43 nucleotidesABID97_RS22440 and ABID97_RS22445 are separated by 118 nucleotides ABID97_RS22430: ABID97_RS22430 - cystathionine beta-lyase, at 4,646,911 to 4,648,128 _RS22430 ABID97_RS22435: ABID97_RS22435 - alpha/beta fold hydrolase, at 4,648,149 to 4,648,997 _RS22435 ABID97_RS22440: ABID97_RS22440 - DUF1161 domain-containing protein, at 4,649,041 to 4,649,373 _RS22440 ABID97_RS22445: ABID97_RS22445 - sel1 repeat family protein, at 4,649,492 to 4,649,911 _RS22445 Position (kb) 4648 4649Strain fitness (log2 ratio) -1 0 1 2at 4647.431 kb on - strand, within ABID97_RS22430at 4647.523 kb on + strand, within ABID97_RS22430at 4647.575 kb on - strand, within ABID97_RS22430at 4648.756 kb on + strand, within ABID97_RS22435at 4648.757 kb on - strand, within ABID97_RS22435at 4648.799 kb on - strand, within ABID97_RS22435at 4648.799 kb on - strand, within ABID97_RS22435at 4648.840 kb on + strand, within ABID97_RS22435at 4648.840 kb on + strand, within ABID97_RS22435at 4648.841 kb on - strand, within ABID97_RS22435at 4649.042 kb on + strandat 4649.168 kb on + strand, within ABID97_RS22440at 4649.417 kb on - strandat 4649.737 kb on - strand, within ABID97_RS22445

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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4,647,431 - ABID97_RS22430 0.43 -0.1
4,647,523 + ABID97_RS22430 0.50 +0.7
4,647,575 - ABID97_RS22430 0.55 -0.6
4,648,756 + ABID97_RS22435 0.71 +0.1
4,648,757 - ABID97_RS22435 0.72 +0.5
4,648,799 - ABID97_RS22435 0.77 -0.7
4,648,799 - ABID97_RS22435 0.77 -0.5
4,648,840 + ABID97_RS22435 0.81 -1.5
4,648,840 + ABID97_RS22435 0.81 -0.5
4,648,841 - ABID97_RS22435 0.82 -1.2
4,649,042 + -0.0
4,649,168 + ABID97_RS22440 0.38 +0.5
4,649,417 - +1.9
4,649,737 - ABID97_RS22445 0.58 -1.3

Or see this region's nucleotide sequence