Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22050 and ABID97_RS22055 are separated by 74 nucleotides ABID97_RS22055 and ABID97_RS22060 are separated by 97 nucleotides
ABID97_RS22050: ABID97_RS22050 - BMP family ABC transporter substrate-binding protein, at 4,561,739 to 4,562,851
_RS22050
ABID97_RS22055: ABID97_RS22055 - LysR substrate-binding domain-containing protein, at 4,562,926 to 4,563,861
_RS22055
ABID97_RS22060: ABID97_RS22060 - MFS transporter, at 4,563,959 to 4,565,254
_RS22060
Position (kb)
4562
4563
4564 Strain fitness (log2 ratio)
-1
0
1 at 4562.046 kb on + strand, within ABID97_RS22050 at 4562.047 kb on - strand, within ABID97_RS22050 at 4562.047 kb on - strand, within ABID97_RS22050 at 4562.047 kb on - strand, within ABID97_RS22050 at 4562.049 kb on + strand, within ABID97_RS22050 at 4562.050 kb on - strand, within ABID97_RS22050 at 4562.050 kb on - strand, within ABID97_RS22050 at 4562.118 kb on + strand, within ABID97_RS22050 at 4562.424 kb on + strand, within ABID97_RS22050 at 4562.424 kb on + strand, within ABID97_RS22050 at 4562.425 kb on - strand, within ABID97_RS22050 at 4562.425 kb on - strand, within ABID97_RS22050 at 4562.425 kb on - strand, within ABID97_RS22050 at 4562.466 kb on + strand, within ABID97_RS22050 at 4562.467 kb on - strand, within ABID97_RS22050 at 4562.467 kb on - strand, within ABID97_RS22050 at 4562.532 kb on + strand, within ABID97_RS22050 at 4562.724 kb on + strand, within ABID97_RS22050 at 4562.862 kb on + strand at 4562.862 kb on + strand at 4562.863 kb on - strand at 4562.863 kb on - strand at 4562.863 kb on - strand at 4562.863 kb on - strand at 4562.928 kb on - strand at 4563.647 kb on + strand, within ABID97_RS22055 at 4563.648 kb on - strand, within ABID97_RS22055
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 4,562,046 + ABID97_RS22050 0.28 -0.1 4,562,047 - ABID97_RS22050 0.28 +0.6 4,562,047 - ABID97_RS22050 0.28 +0.1 4,562,047 - ABID97_RS22050 0.28 +0.3 4,562,049 + ABID97_RS22050 0.28 -0.3 4,562,050 - ABID97_RS22050 0.28 -0.9 4,562,050 - ABID97_RS22050 0.28 -0.3 4,562,118 + ABID97_RS22050 0.34 +0.3 4,562,424 + ABID97_RS22050 0.62 -0.9 4,562,424 + ABID97_RS22050 0.62 -0.7 4,562,425 - ABID97_RS22050 0.62 -0.1 4,562,425 - ABID97_RS22050 0.62 -0.3 4,562,425 - ABID97_RS22050 0.62 +0.9 4,562,466 + ABID97_RS22050 0.65 -0.8 4,562,467 - ABID97_RS22050 0.65 -0.3 4,562,467 - ABID97_RS22050 0.65 +0.0 4,562,532 + ABID97_RS22050 0.71 -1.1 4,562,724 + ABID97_RS22050 0.88 -0.6 4,562,862 + -0.3 4,562,862 + -0.8 4,562,863 - +0.2 4,562,863 - -0.2 4,562,863 - -0.6 4,562,863 - -0.5 4,562,928 - -0.4 4,563,647 + ABID97_RS22055 0.77 -1.0 4,563,648 - ABID97_RS22055 0.77 -0.4
Or see this region's nucleotide sequence