Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22015

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS22005 and ABID97_RS22010 overlap by 4 nucleotidesABID97_RS22010 and ABID97_RS22015 overlap by 4 nucleotidesABID97_RS22015 and ABID97_RS22020 overlap by 4 nucleotides ABID97_RS22005: ABID97_RS22005 - acyl-CoA dehydrogenase family protein, at 4,552,282 to 4,553,523 _RS22005 ABID97_RS22010: ABID97_RS22010 - ABC transporter substrate-binding protein, at 4,553,520 to 4,554,500 _RS22010 ABID97_RS22015: ABID97_RS22015 - cysteine dioxygenase, at 4,554,497 to 4,555,114 _RS22015 ABID97_RS22020: ABID97_RS22020 - rhodanese-related sulfurtransferase, at 4,555,111 to 4,556,739 _RS22020 Position (kb) 4554 4555 4556Strain fitness (log2 ratio) -1 0 1 2at 4553.712 kb on + strand, within ABID97_RS22010at 4553.713 kb on - strand, within ABID97_RS22010at 4553.970 kb on + strand, within ABID97_RS22010at 4554.105 kb on + strand, within ABID97_RS22010at 4554.105 kb on + strand, within ABID97_RS22010at 4554.289 kb on - strand, within ABID97_RS22010at 4554.300 kb on + strand, within ABID97_RS22010at 4554.821 kb on + strand, within ABID97_RS22015at 4554.972 kb on - strand, within ABID97_RS22015at 4555.003 kb on + strand, within ABID97_RS22015at 4555.003 kb on + strand, within ABID97_RS22015at 4555.003 kb on + strand, within ABID97_RS22015at 4555.003 kb on + strand, within ABID97_RS22015at 4555.003 kb on + strand, within ABID97_RS22015at 4555.004 kb on - strand, within ABID97_RS22015at 4555.004 kb on - strand, within ABID97_RS22015at 4555.004 kb on - strand, within ABID97_RS22015at 4555.008 kb on - strand, within ABID97_RS22015at 4555.385 kb on - strand, within ABID97_RS22020at 4555.972 kb on + strand, within ABID97_RS22020at 4556.002 kb on + strand, within ABID97_RS22020

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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4,553,712 + ABID97_RS22010 0.20 -1.6
4,553,713 - ABID97_RS22010 0.20 +0.9
4,553,970 + ABID97_RS22010 0.46 -0.1
4,554,105 + ABID97_RS22010 0.60 +0.0
4,554,105 + ABID97_RS22010 0.60 -0.8
4,554,289 - ABID97_RS22010 0.78 +0.4
4,554,300 + ABID97_RS22010 0.80 -0.4
4,554,821 + ABID97_RS22015 0.52 +2.7
4,554,972 - ABID97_RS22015 0.77 -0.7
4,555,003 + ABID97_RS22015 0.82 +0.1
4,555,003 + ABID97_RS22015 0.82 +0.9
4,555,003 + ABID97_RS22015 0.82 +0.0
4,555,003 + ABID97_RS22015 0.82 -0.1
4,555,003 + ABID97_RS22015 0.82 +1.7
4,555,004 - ABID97_RS22015 0.82 -1.0
4,555,004 - ABID97_RS22015 0.82 -0.1
4,555,004 - ABID97_RS22015 0.82 +0.2
4,555,008 - ABID97_RS22015 0.83 +1.1
4,555,385 - ABID97_RS22020 0.17 +0.1
4,555,972 + ABID97_RS22020 0.53 -0.1
4,556,002 + ABID97_RS22020 0.55 -0.6

Or see this region's nucleotide sequence