Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19950 and ABID97_RS19955 overlap by 1 nucleotides ABID97_RS19955 and ABID97_RS19960 are separated by 189 nucleotides
ABID97_RS19950: ABID97_RS19950 - ABC transporter ATP-binding protein, at 4,118,056 to 4,119,129
_RS19950
ABID97_RS19955: ABID97_RS19955 - glycerol-3-phosphate dehydrogenase, at 4,119,129 to 4,120,733
_RS19955
ABID97_RS19960: ABID97_RS19960 - DeoR/GlpR family DNA-binding transcription regulator, at 4,120,923 to 4,121,690
_RS19960
Position (kb)
4119
4120
4121 Strain fitness (log2 ratio)
-1
0
1
2 at 4118.136 kb on - strand at 4118.136 kb on - strand at 4118.136 kb on - strand at 4118.136 kb on - strand at 4118.495 kb on + strand, within ABID97_RS19950 at 4118.642 kb on + strand, within ABID97_RS19950 at 4118.643 kb on - strand, within ABID97_RS19950 at 4118.873 kb on + strand, within ABID97_RS19950 at 4118.892 kb on - strand, within ABID97_RS19950 at 4119.075 kb on - strand at 4119.439 kb on - strand, within ABID97_RS19955 at 4119.677 kb on - strand, within ABID97_RS19955 at 4119.740 kb on - strand, within ABID97_RS19955 at 4120.526 kb on - strand, within ABID97_RS19955 at 4120.784 kb on - strand at 4120.784 kb on - strand at 4120.885 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 4,118,136 - +0.6 4,118,136 - -0.5 4,118,136 - -0.1 4,118,136 - +0.4 4,118,495 + ABID97_RS19950 0.41 +0.1 4,118,642 + ABID97_RS19950 0.55 -0.3 4,118,643 - ABID97_RS19950 0.55 -0.0 4,118,873 + ABID97_RS19950 0.76 +0.1 4,118,892 - ABID97_RS19950 0.78 -0.0 4,119,075 - +0.7 4,119,439 - ABID97_RS19955 0.19 -0.9 4,119,677 - ABID97_RS19955 0.34 -0.4 4,119,740 - ABID97_RS19955 0.38 -1.5 4,120,526 - ABID97_RS19955 0.87 -1.6 4,120,784 - +0.4 4,120,784 - +1.8 4,120,885 - +2.5
Or see this region's nucleotide sequence