Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18380

Experiment: V2_10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS18360 and ABID97_RS18365 are separated by 161 nucleotidesABID97_RS18365 and ABID97_RS18370 overlap by 4 nucleotidesABID97_RS18370 and ABID97_RS18375 are separated by 29 nucleotidesABID97_RS18375 and ABID97_RS18380 are separated by 52 nucleotidesABID97_RS18380 and ABID97_RS18385 are separated by 478 nucleotides ABID97_RS18360: ABID97_RS18360 - hypothetical protein, at 3,794,946 to 3,795,911 _RS18360 ABID97_RS18365: ABID97_RS18365 - hypothetical protein, at 3,796,073 to 3,796,198 _RS18365 ABID97_RS18370: ABID97_RS18370 - hypothetical protein, at 3,796,195 to 3,796,467 _RS18370 ABID97_RS18375: ABID97_RS18375 - hypothetical protein, at 3,796,497 to 3,796,730 _RS18375 ABID97_RS18380: ABID97_RS18380 - hypothetical protein, at 3,796,783 to 3,796,965 _RS18380 ABID97_RS18385: ABID97_RS18385 - hypothetical protein, at 3,797,444 to 3,798,181 _RS18385 Position (kb) 3796 3797Strain fitness (log2 ratio) -1 0 1at 3795.818 kb on - strandat 3795.839 kb on + strandat 3796.202 kb on - strandat 3796.522 kb on - strand, within ABID97_RS18375at 3796.622 kb on - strand, within ABID97_RS18375at 3796.867 kb on + strand, within ABID97_RS18380at 3796.909 kb on + strand, within ABID97_RS18380at 3796.910 kb on - strand, within ABID97_RS18380at 3796.964 kb on - strandat 3797.185 kb on - strandat 3797.680 kb on - strand, within ABID97_RS18385at 3797.787 kb on + strand, within ABID97_RS18385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
remove
3,795,818 - +0.2
3,795,839 + +0.2
3,796,202 - -0.8
3,796,522 - ABID97_RS18375 0.11 -0.8
3,796,622 - ABID97_RS18375 0.53 +0.1
3,796,867 + ABID97_RS18380 0.46 -0.8
3,796,909 + ABID97_RS18380 0.69 -1.4
3,796,910 - ABID97_RS18380 0.69 -0.8
3,796,964 - -1.4
3,797,185 - -1.0
3,797,680 - ABID97_RS18385 0.32 -0.4
3,797,787 + ABID97_RS18385 0.46 -0.3

Or see this region's nucleotide sequence