Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18360 and ABID97_RS18365 are separated by 161 nucleotides ABID97_RS18365 and ABID97_RS18370 overlap by 4 nucleotides ABID97_RS18370 and ABID97_RS18375 are separated by 29 nucleotides ABID97_RS18375 and ABID97_RS18380 are separated by 52 nucleotides ABID97_RS18380 and ABID97_RS18385 are separated by 478 nucleotides
ABID97_RS18360: ABID97_RS18360 - hypothetical protein, at 3,794,946 to 3,795,911
_RS18360
ABID97_RS18365: ABID97_RS18365 - hypothetical protein, at 3,796,073 to 3,796,198
_RS18365
ABID97_RS18370: ABID97_RS18370 - hypothetical protein, at 3,796,195 to 3,796,467
_RS18370
ABID97_RS18375: ABID97_RS18375 - hypothetical protein, at 3,796,497 to 3,796,730
_RS18375
ABID97_RS18380: ABID97_RS18380 - hypothetical protein, at 3,796,783 to 3,796,965
_RS18380
ABID97_RS18385: ABID97_RS18385 - hypothetical protein, at 3,797,444 to 3,798,181
_RS18385
Position (kb)
3796
3797 Strain fitness (log2 ratio)
-1
0
1 at 3795.818 kb on - strand at 3795.839 kb on + strand at 3796.202 kb on - strand at 3796.522 kb on - strand, within ABID97_RS18375 at 3796.622 kb on - strand, within ABID97_RS18375 at 3796.867 kb on + strand, within ABID97_RS18380 at 3796.909 kb on + strand, within ABID97_RS18380 at 3796.910 kb on - strand, within ABID97_RS18380 at 3796.964 kb on - strand at 3797.185 kb on - strand at 3797.680 kb on - strand, within ABID97_RS18385 at 3797.787 kb on + strand, within ABID97_RS18385
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 3,795,818 - +0.2 3,795,839 + +0.2 3,796,202 - -0.8 3,796,522 - ABID97_RS18375 0.11 -0.8 3,796,622 - ABID97_RS18375 0.53 +0.1 3,796,867 + ABID97_RS18380 0.46 -0.8 3,796,909 + ABID97_RS18380 0.69 -1.4 3,796,910 - ABID97_RS18380 0.69 -0.8 3,796,964 - -1.4 3,797,185 - -1.0 3,797,680 - ABID97_RS18385 0.32 -0.4 3,797,787 + ABID97_RS18385 0.46 -0.3
Or see this region's nucleotide sequence