Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16220

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16210 and ABID97_RS16215 are separated by 17 nucleotidesABID97_RS16215 and ABID97_RS16220 are separated by 13 nucleotidesABID97_RS16220 and ABID97_RS16225 are separated by 10 nucleotides ABID97_RS16210: ABID97_RS16210 - cytochrome-c oxidase, cbb3-type subunit III, at 3,356,151 to 3,357,062 _RS16210 ABID97_RS16215: ABID97_RS16215 - CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone, at 3,357,080 to 3,357,220 _RS16215 ABID97_RS16220: ABID97_RS16220 - cytochrome-c oxidase, cbb3-type subunit II, at 3,357,234 to 3,357,866 _RS16220 ABID97_RS16225: ABID97_RS16225 - cytochrome-c oxidase, cbb3-type subunit I, at 3,357,877 to 3,359,316 _RS16225 Position (kb) 3357 3358Strain fitness (log2 ratio) -2 -1 0 1 2at 3356.293 kb on + strand, within ABID97_RS16210at 3356.449 kb on + strand, within ABID97_RS16210at 3357.029 kb on - strandat 3357.418 kb on + strand, within ABID97_RS16220at 3357.490 kb on + strand, within ABID97_RS16220at 3357.640 kb on + strand, within ABID97_RS16220at 3357.980 kb on + strandat 3358.049 kb on + strand, within ABID97_RS16225at 3358.128 kb on - strand, within ABID97_RS16225at 3358.184 kb on + strand, within ABID97_RS16225at 3358.202 kb on + strand, within ABID97_RS16225at 3358.203 kb on - strand, within ABID97_RS16225at 3358.220 kb on + strand, within ABID97_RS16225at 3358.220 kb on + strand, within ABID97_RS16225at 3358.220 kb on + strand, within ABID97_RS16225at 3358.559 kb on + strand, within ABID97_RS16225at 3358.560 kb on - strand, within ABID97_RS16225at 3358.638 kb on - strand, within ABID97_RS16225at 3358.638 kb on - strand, within ABID97_RS16225at 3358.641 kb on - strand, within ABID97_RS16225at 3358.641 kb on - strand, within ABID97_RS16225at 3358.643 kb on + strand, within ABID97_RS16225at 3358.644 kb on - strand, within ABID97_RS16225at 3358.644 kb on - strand, within ABID97_RS16225at 3358.838 kb on + strand, within ABID97_RS16225at 3358.838 kb on + strand, within ABID97_RS16225at 3358.839 kb on - strand, within ABID97_RS16225at 3358.849 kb on + strand, within ABID97_RS16225

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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3,356,293 + ABID97_RS16210 0.16 +1.0
3,356,449 + ABID97_RS16210 0.33 +0.9
3,357,029 - -0.1
3,357,418 + ABID97_RS16220 0.29 -0.5
3,357,490 + ABID97_RS16220 0.40 -1.3
3,357,640 + ABID97_RS16220 0.64 -1.0
3,357,980 + -0.6
3,358,049 + ABID97_RS16225 0.12 +1.8
3,358,128 - ABID97_RS16225 0.17 +0.1
3,358,184 + ABID97_RS16225 0.21 +0.6
3,358,202 + ABID97_RS16225 0.23 -2.0
3,358,203 - ABID97_RS16225 0.23 -0.0
3,358,220 + ABID97_RS16225 0.24 +0.7
3,358,220 + ABID97_RS16225 0.24 +0.6
3,358,220 + ABID97_RS16225 0.24 -0.2
3,358,559 + ABID97_RS16225 0.47 -0.2
3,358,560 - ABID97_RS16225 0.47 +0.2
3,358,638 - ABID97_RS16225 0.53 -0.1
3,358,638 - ABID97_RS16225 0.53 -1.1
3,358,641 - ABID97_RS16225 0.53 +0.9
3,358,641 - ABID97_RS16225 0.53 -0.1
3,358,643 + ABID97_RS16225 0.53 -1.1
3,358,644 - ABID97_RS16225 0.53 -0.8
3,358,644 - ABID97_RS16225 0.53 +1.3
3,358,838 + ABID97_RS16225 0.67 +1.1
3,358,838 + ABID97_RS16225 0.67 +0.3
3,358,839 - ABID97_RS16225 0.67 +0.0
3,358,849 + ABID97_RS16225 0.68 -0.1

Or see this region's nucleotide sequence