Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16160

Experiment: V2_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16150 and ABID97_RS16155 are separated by 189 nucleotidesABID97_RS16155 and ABID97_RS16160 are separated by 45 nucleotidesABID97_RS16160 and ABID97_RS16165 are separated by 245 nucleotidesABID97_RS16165 and ABID97_RS16170 overlap by 4 nucleotides ABID97_RS16150: ABID97_RS16150 - hemerythrin domain-containing protein, at 3,343,640 to 3,344,224 _RS16150 ABID97_RS16155: ABID97_RS16155 - universal stress protein, at 3,344,414 to 3,344,923 _RS16155 ABID97_RS16160: ABID97_RS16160 - fatty acid desaturase, at 3,344,969 to 3,346,153 _RS16160 ABID97_RS16165: ABID97_RS16165 - BON domain-containing protein, at 3,346,399 to 3,346,662 _RS16165 ABID97_RS16170: ABID97_RS16170 - phosphoketolase family protein, at 3,346,659 to 3,349,016 _RS16170 Position (kb) 3344 3345 3346 3347Strain fitness (log2 ratio) -2 -1 0 1 2at 3344.082 kb on + strand, within ABID97_RS16150at 3344.083 kb on - strand, within ABID97_RS16150at 3344.417 kb on + strandat 3344.417 kb on + strandat 3344.418 kb on - strandat 3344.418 kb on - strandat 3344.564 kb on + strand, within ABID97_RS16155at 3344.565 kb on - strand, within ABID97_RS16155at 3344.565 kb on - strand, within ABID97_RS16155at 3344.565 kb on - strand, within ABID97_RS16155at 3344.976 kb on + strandat 3344.976 kb on + strandat 3344.976 kb on + strandat 3345.016 kb on + strandat 3345.309 kb on + strand, within ABID97_RS16160at 3345.310 kb on - strand, within ABID97_RS16160at 3345.475 kb on - strand, within ABID97_RS16160at 3345.475 kb on - strand, within ABID97_RS16160at 3345.609 kb on + strand, within ABID97_RS16160at 3345.756 kb on + strand, within ABID97_RS16160at 3345.837 kb on + strand, within ABID97_RS16160at 3346.313 kb on + strandat 3346.842 kb on + strandat 3346.843 kb on - strandat 3346.843 kb on - strandat 3346.953 kb on + strand, within ABID97_RS16170at 3346.953 kb on + strand, within ABID97_RS16170at 3346.954 kb on - strand, within ABID97_RS16170at 3346.954 kb on - strand, within ABID97_RS16170at 3346.966 kb on - strand, within ABID97_RS16170at 3347.095 kb on - strand, within ABID97_RS16170at 3347.112 kb on + strand, within ABID97_RS16170

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Per-strain Table

Position Strand Gene LocusTag Fraction V2_10
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3,344,082 + ABID97_RS16150 0.76 +0.2
3,344,083 - ABID97_RS16150 0.76 -1.2
3,344,417 + -0.1
3,344,417 + +0.3
3,344,418 - +0.6
3,344,418 - -1.1
3,344,564 + ABID97_RS16155 0.29 +0.1
3,344,565 - ABID97_RS16155 0.30 -0.1
3,344,565 - ABID97_RS16155 0.30 -0.3
3,344,565 - ABID97_RS16155 0.30 -2.0
3,344,976 + +0.5
3,344,976 + +0.3
3,344,976 + -0.1
3,345,016 + -0.4
3,345,309 + ABID97_RS16160 0.29 +0.3
3,345,310 - ABID97_RS16160 0.29 -0.3
3,345,475 - ABID97_RS16160 0.43 +0.5
3,345,475 - ABID97_RS16160 0.43 -0.4
3,345,609 + ABID97_RS16160 0.54 -1.1
3,345,756 + ABID97_RS16160 0.66 -1.3
3,345,837 + ABID97_RS16160 0.73 -1.3
3,346,313 + -1.3
3,346,842 + +0.2
3,346,843 - +0.1
3,346,843 - +0.9
3,346,953 + ABID97_RS16170 0.12 +0.2
3,346,953 + ABID97_RS16170 0.12 +0.1
3,346,954 - ABID97_RS16170 0.13 +2.1
3,346,954 - ABID97_RS16170 0.13 +0.5
3,346,966 - ABID97_RS16170 0.13 +0.1
3,347,095 - ABID97_RS16170 0.18 -0.6
3,347,112 + ABID97_RS16170 0.19 +0.2

Or see this region's nucleotide sequence