Experiment: V2_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15385 and ABID97_RS15390 overlap by 4 nucleotides ABID97_RS15390 and ABID97_RS15395 are separated by 18 nucleotides ABID97_RS15395 and ABID97_RS15400 are separated by 10 nucleotides
ABID97_RS15385: ABID97_RS15385 - M55 family metallopeptidase, at 3,182,668 to 3,183,486
_RS15385
ABID97_RS15390: ABID97_RS15390 - P1 family peptidase, at 3,183,483 to 3,184,562
_RS15390
ABID97_RS15395: ABID97_RS15395 - glutathione ABC transporter permease GsiD, at 3,184,581 to 3,185,510
_RS15395
ABID97_RS15400: ABID97_RS15400 - glutathione ABC transporter permease GsiC, at 3,185,521 to 3,186,441
_RS15400
Position (kb) 3183
3184
3185 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3182.509 kb on + strand at 3182.661 kb on - strand at 3183.053 kb on + strand, within ABID97_RS15385 at 3183.074 kb on + strand, within ABID97_RS15385 at 3183.179 kb on + strand, within ABID97_RS15385 at 3183.441 kb on - strand at 3183.603 kb on + strand, within ABID97_RS15390 at 3183.604 kb on - strand, within ABID97_RS15390 at 3183.967 kb on + strand, within ABID97_RS15390 at 3183.967 kb on + strand, within ABID97_RS15390 at 3184.583 kb on - strand at 3184.803 kb on - strand, within ABID97_RS15395 at 3184.822 kb on + strand, within ABID97_RS15395 at 3185.428 kb on - strand at 3185.528 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction V2_10 remove 3,182,509 + +2.2 3,182,661 - -0.5 3,183,053 + ABID97_RS15385 0.47 +0.2 3,183,074 + ABID97_RS15385 0.50 +0.1 3,183,179 + ABID97_RS15385 0.62 -0.1 3,183,441 - +0.3 3,183,603 + ABID97_RS15390 0.11 -0.3 3,183,604 - ABID97_RS15390 0.11 -1.8 3,183,967 + ABID97_RS15390 0.45 -1.9 3,183,967 + ABID97_RS15390 0.45 +0.0 3,184,583 - +0.1 3,184,803 - ABID97_RS15395 0.24 +0.9 3,184,822 + ABID97_RS15395 0.26 +0.4 3,185,428 - -1.2 3,185,528 + +0.0
Or see this region's nucleotide sequence